Variant report

Variant	rs11087375
Chromosome Location	chr20:22278295-22278296
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs182121	1.00[ASN][1000 genomes]
rs183216	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs183890	0.95[ASN][1000 genomes]
rs191836	1.00[ASN][1000 genomes]
rs199780	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs199781	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs199793	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs200358	0.95[ASN][1000 genomes]
rs200361	0.93[ASN][1000 genomes]
rs200366	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv962639	chr20:22254826-22283685	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22276600-22278400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr20:22276600-22278600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr20:22276600-22278600	Enhancers	NHEK	skin
4	chr20:22277600-22278400	Enhancers	HMEC	breast
5	chr20:22278000-22278400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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