Variant report

Variant	rs11087400
Chromosome Location	chr20:22796990-22796991
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22791420..22794009-chr20:22795850..22798324,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11087401	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11907115	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2207170	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4815148	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048361	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6048364	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6048372	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6082846	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6082852	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6082855	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6082860	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs730409	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs742850	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs932467	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv3334	chr20:22773462-22818362	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3446424	chr20:22796652-22798600	Enhancers Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22792400-22799000	Weak transcription	Placenta	Placenta
2	chr20:22794400-22797200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr20:22794600-22797200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr20:22794800-22797000	Enhancers	Primary hematopoietic stem cells	blood
5	chr20:22795000-22797200	Enhancers	Fetal Muscle Leg	muscle
6	chr20:22795600-22797000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr20:22795600-22797200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr20:22795600-22798600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr20:22795800-22802400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr20:22796000-22797200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr20:22796200-22802000	Weak transcription	Fetal Stomach	stomach
12	chr20:22796400-22797000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr20:22796400-22797000	Active TSS	Brain Hippocampus Middle	brain
14	chr20:22796600-22797000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr20:22796600-22797000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr20:22796600-22797000	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr20:22796600-22797200	Enhancers	H9 Cell Line	embryonic stem cell
18	chr20:22796600-22797200	Enhancers	HSMMtube	muscle
19	chr20:22796600-22801600	Weak transcription	Fetal Muscle Trunk	muscle
20	chr20:22796800-22797000	Enhancers	Fetal Kidney	kidney

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