Variant report

Variant	rs11088353
Chromosome Location	chr21:37896560-37896561
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:37896121..37897904-chr21:37913611..37915970,2	MCF-7	breast:
2	chr21:37896205..37897774-chr21:38337593..38339393,2	K562	blood:
3	chr21:37894158..37897213-chr21:37901211..37904346,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000159261	Chromatin interaction
ENSG00000159267	Chromatin interaction
ENSG00000224790	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11088354	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2000547	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2070518	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2187302	0.90[ASN][1000 genomes]
rs2187303	0.87[ASN][1000 genomes]
rs367166	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs376218	0.83[EUR][1000 genomes]
rs398591	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs399711	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs400019	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs400267	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs400544	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs404515	0.83[EUR][1000 genomes]
rs412775	0.83[EUR][1000 genomes]
rs413616	0.83[EUR][1000 genomes]
rs431530	0.82[EUR][1000 genomes]
rs439888	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs441734	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs443968	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs448332	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs448687	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs449547	0.83[EUR][1000 genomes]
rs453539	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4816539	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6517359	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7281531	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7282508	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7510508	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs928839	0.84[EUR][1000 genomes]
rs9976609	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834090	chr21:37812545-38009542	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1064290	chr21:37878964-37983133	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37893400-37897200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr21:37893800-37897800	Enhancers	Fetal Muscle Leg	muscle
3	chr21:37894800-37898800	Weak transcription	Right Atrium	heart
4	chr21:37895800-37902600	Weak transcription	GM12878-XiMat	blood
5	chr21:37896400-37896800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle

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