Variant report

Variant	rs11088545
Chromosome Location	chr21:17156720-17156721
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:17104010..17105531-chr21:17155055..17156862,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs9974166	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9981946	1.00[EUR][1000 genomes]
rs9983171	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815433	chr21:17106192-17167353	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv834050	chr21:17146090-17348951	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv1063035	chr21:17154222-17224344	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17130800-17156800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr21:17145800-17166600	Weak transcription	Psoas Muscle	Psoas
3	chr21:17148000-17160200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr21:17151600-17160600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr21:17151800-17191000	Weak transcription	NH-A	brain
6	chr21:17154800-17159600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr21:17154800-17161000	Weak transcription	Stomach Mucosa	stomach
8	chr21:17155000-17156800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr21:17155000-17156800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr21:17155000-17158800	Weak transcription	Colonic Mucosa	Colon
11	chr21:17155000-17160400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr21:17155000-17161200	Weak transcription	Gastric	stomach
13	chr21:17155000-17161200	Weak transcription	HMEC	breast
14	chr21:17155000-17165200	Weak transcription	Brain Hippocampus Middle	brain
15	chr21:17155000-17166600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr21:17155000-17166800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr21:17155000-17171000	Weak transcription	Dnd41	blood
18	chr21:17155000-17179800	Weak transcription	Spleen	Spleen
19	chr21:17155000-17187400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr21:17155000-17188600	Weak transcription	HepG2	liver
21	chr21:17155200-17157000	Weak transcription	Lung	lung
22	chr21:17155200-17158000	Weak transcription	Ovary	ovary
23	chr21:17155200-17158000	Weak transcription	Pancreas	Pancrea
24	chr21:17155200-17159400	Weak transcription	HUVEC	blood vessel
25	chr21:17155200-17160400	Weak transcription	Aorta	Aorta
26	chr21:17155200-17160600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr21:17155200-17160600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr21:17155200-17160600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr21:17155200-17160800	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr21:17155200-17160800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr21:17155200-17160800	Weak transcription	Hela-S3	cervix
32	chr21:17155200-17160800	Weak transcription	NHDF-Ad	bronchial
33	chr21:17155200-17161000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr21:17155200-17161000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr21:17155200-17161000	Weak transcription	NHLF	lung
36	chr21:17155200-17161200	Weak transcription	Adipose Nuclei	Adipose
37	chr21:17155200-17161200	Weak transcription	Osteobl	bone
38	chr21:17155200-17162400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr21:17155200-17163600	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr21:17155200-17166000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr21:17155200-17166600	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr21:17155200-17167600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr21:17155200-17168200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr21:17155200-17168600	Weak transcription	K562	blood
45	chr21:17155200-17169800	Weak transcription	Liver	Liver
46	chr21:17155200-17169800	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr21:17155200-17177000	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr21:17155200-17177000	Weak transcription	Brain Anterior Caudate	brain
49	chr21:17155200-17177000	Weak transcription	Brain Cingulate Gyrus	brain
50	chr21:17155200-17177000	Weak transcription	Rectal Mucosa Donor 29	rectum

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