Variant report

Variant	rs11089088
Chromosome Location	chr21:48054714-48054715
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr21:48054581-48056215	ProgFib	skin:	n/a	n/a
2	MAX	chr21:48054229-48056363	MCF-7	breast:	n/a	n/a
3	MXI1	chr21:48054420-48056901	SK-N-SH	brain:	n/a	n/a
4	GABPA	chr21:48054328-48056211	MCF-7	breast:	n/a	chr21:48055401-48055412 chr21:48055572-48055581 chr21:48055403-48055412 chr21:48055398-48055412 chr21:48055567-48055581 chr21:48055401-48055415 chr21:48055570-48055581 chr21:48055268-48055277 chr21:48055570-48055584 chr21:48055448-48055462
5	POLR2A	chr21:48054687-48056130	SK-N-SH	brain:	n/a	n/a
6	POLR2A	chr21:48054524-48056279	MCF-7	breast:	n/a	n/a
7	POLR2A	chr21:48054410-48056060	GM12892	blood:	n/a	n/a
8	POLR2A	chr21:48054684-48056352	HUVEC	blood vessel:	n/a	n/a
9	MXI1	chr21:48054463-48056490	IMR90	lung:	n/a	n/a
10	SIN3AK20	chr21:48054647-48056500	MCF-7	breast:	n/a	n/a
11	POLR2A	chr21:48054480-48056025	GM12891	blood:	n/a	n/a
12	POLR2A	chr21:48054579-48056190	HepG2	liver:	n/a	n/a
13	SRF	chr21:48054667-48056272	MCF-7	breast:	n/a	chr21:48055908-48055925 chr21:48055910-48055924
14	POLR2A	chr21:48054185-48056228	SK-N-MC	brain:	n/a	n/a
15	POLR2A	chr21:48054642-48056170	GM12892	blood:	n/a	n/a
16	HEY1	chr21:48054547-48056042	K562	blood:	n/a	chr21:48056004-48056019
17	TEAD4	chr21:48054657-48056445	K562	blood:	n/a	n/a
18	ELF1	chr21:48054682-48056338	MCF-7	breast:	n/a	chr21:48055244-48055256
19	POLR2A	chr21:48054070-48056167	H1-hESC	embryonic stem cell:	n/a	n/a
20	REST	chr21:48054513-48056221	H1-neurons	neurons:	n/a	chr21:48056006-48056015 chr21:48056006-48056019 chr21:48055415-48055433
21	POLR2A	chr21:48054676-48056236	U87	brain:	n/a	n/a
22	MTA3	chr21:48054687-48056061	GM12878	blood:	n/a	n/a
23	NR2F2	chr21:48054536-48056207	K562	blood:	n/a	n/a
24	CBX3	chr21:48054356-48056106	K562	blood:	n/a	n/a
25	TAF1	chr21:48054688-48056045	H1-hESC	embryonic stem cell:	n/a	n/a
26	NRF1	chr21:48054651-48056349	SK-N-SH	brain:	n/a	chr21:48055401-48055412 chr21:48055572-48055581 chr21:48055403-48055412 chr21:48055398-48055412 chr21:48055567-48055581 chr21:48055401-48055415 chr21:48055570-48055581 chr21:48055268-48055277 chr21:48055570-48055584 chr21:48055448-48055462
27	POLR2A	chr21:48054696-48055888	GM12878	blood:	n/a	n/a
28	HCFC1	chr21:48054528-48056386	Hela-S3	cervix:	n/a	n/a
29	POLR2A	chr21:48054677-48056207	PFSK-1	brain:	n/a	n/a
30	POLR2A	chr21:48054331-48056200	GM12878	blood:	n/a	n/a
31	POLR2A	chr21:48054566-48056142	HCT-116	colon:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr21:48054348..48057362-chr21:48062068..48064635,4	K562	blood:
2	chr21:47945113..47947005-chr21:48054397..48057093,2	MCF-7	breast:
3	chr21:48054316..48057026-chr21:48067023..48068538,2	K562	blood:
4	chr21:48023339..48026982-chr21:48053855..48056881,6	MCF-7	breast:
5	chr21:48054376..48056073-chr21:48072079..48074243,2	K562	blood:
6	chr21:48024544..48027148-chr21:48052838..48054939,2	K562	blood:
7	chr21:47875258..47880014-chr21:48054452..48058643,10	K562	blood:
8	chr21:47972251..47974231-chr21:48053496..48055796,2	K562	blood:
9	chr21:47741705..47745829-chr21:48053977..48057908,5	MCF-7	breast:
10	chr21:47742343..47745058-chr21:48054003..48056846,3	K562	blood:
11	chr21:47878168..47880063-chr21:48054664..48057491,4	MCF-7	breast:
12	chr21:47877118..47880921-chr21:48053345..48058142,9	K562	blood:

Variant related genes	Relation type
PRMT2	TF binding region
ENSG00000160298	Chromatin interaction
ENSG00000160299	Chromatin interaction
ENSG00000230982	Chromatin interaction
ENSG00000160307	Chromatin interaction
ENSG00000160310	Chromatin interaction
ENSG00000202239	Chromatin interaction
ENSG00000160305	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10084620	0.84[AMR][1000 genomes]
rs10084621	0.84[AMR][1000 genomes]
rs1023351	0.84[AMR][1000 genomes]
rs28523340	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60526571	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:58 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065959	chr21:47188878-48091343	Bivalent Enhancer Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	102 gene(s)	inside rSNPs	n/a
2	nsv531580	chr21:47221774-48090317	Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	n/a
3	nsv918103	chr21:47297067-48089510	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	99 gene(s)	inside rSNPs	n/a
4	nsv470910	chr21:47353775-48084988	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	n/a
5	nsv1059118	chr21:47398331-48090457	Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	n/a
6	nsv544494	chr21:47398331-48090457	Strong transcription Weak transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	n/a
7	nsv934264	chr21:47401083-48090317	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	n/a
8	nsv948761	chr21:47587940-48069930	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	n/a
9	nsv1055239	chr21:47591378-48090317	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	n/a
10	nsv544495	chr21:47591378-48090317	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	n/a
11	nsv949706	chr21:47625544-48069930	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	n/a
12	nsv529496	chr21:47634193-48090317	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	n/a
13	nsv1062858	chr21:47750884-48091343	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	n/a
14	nsv1058397	chr21:47851176-48091343	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	n/a
15	nsv1065502	chr21:47865215-48091343	Strong transcription Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	n/a
16	nsv1061442	chr21:47875370-48091343	Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	n/a
17	nsv1059466	chr21:47894705-48096945	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	n/a
18	nsv1061185	chr21:47901250-48096945	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	n/a
19	nsv587999	chr21:47941916-48103851	Weak transcription Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	n/a
20	nsv1058589	chr21:47948030-48091343	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	n/a
21	nsv1057643	chr21:47953820-48056600	Genic enhancers Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	n/a
22	nsv544497	chr21:47953820-48056600	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	n/a
23	nsv1056734	chr21:47970933-48096945	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	n/a
24	esv2760700	chr21:47974055-48054776	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	n/a
25	nsv1062457	chr21:47975809-48096945	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	n/a
26	nsv1058462	chr21:47980278-48096945	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	n/a
27	nsv1062401	chr21:47983657-48066477	Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	n/a
28	nsv1061638	chr21:47985655-48088263	Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	n/a
29	nsv1059012	chr21:47985655-48096945	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	n/a
30	esv2756756	chr21:47986670-48077812	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	n/a
31	esv2758822	chr21:47986670-48077812	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	n/a
32	nsv1055904	chr21:47986670-48096945	Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	n/a
33	nsv1064633	chr21:47987013-48096945	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	n/a
34	nsv1059493	chr21:47990008-48096945	Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	n/a
35	nsv1063191	chr21:47992710-48096945	ZNF genes & repeats Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	n/a
36	nsv459314	chr21:47995443-48072916	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	n/a
37	nsv588002	chr21:47995443-48072916	Enhancers Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	n/a
38	nsv1060610	chr21:48004056-48096945	Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	n/a
39	esv34393	chr21:48015672-48077812	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	n/a
40	nsv532290	chr21:48018850-48090317	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	n/a
41	nsv1061192	chr21:48019811-48088263	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	n/a
42	nsv1056608	chr21:48021655-48074364	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	n/a
43	nsv1056829	chr21:48021655-48096945	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	n/a
44	nsv529350	chr21:48021759-48080911	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	n/a
45	nsv1062021	chr21:48025794-48096945	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	n/a
46	nsv1058993	chr21:48026443-48096945	Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	n/a
47	nsv1060360	chr21:48027084-48096945	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	n/a
48	nsv1061246	chr21:48028756-48074364	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	n/a
49	nsv1056101	chr21:48028997-48074364	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	n/a
50	nsv1060002	chr21:48030333-48096945	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:48025800-48054800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr21:48042600-48054800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr21:48046800-48054800	Weak transcription	Right Atrium	heart
4	chr21:48052200-48054800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr21:48052200-48054800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr21:48052400-48054800	Enhancers	Fetal Thymus	thymus
7	chr21:48052600-48054800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr21:48052600-48054800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr21:48053000-48054800	Enhancers	Primary T cells fromperipheralblood	blood
10	chr21:48053200-48054800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr21:48053400-48054800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr21:48053800-48054800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr21:48054200-48054800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr21:48054200-48054800	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr21:48054200-48055000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr21:48054400-48054800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr21:48054400-48054800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr21:48054400-48054800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr21:48054400-48054800	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr21:48054400-48054800	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr21:48054400-48054800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr21:48054400-48054800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr21:48054400-48054800	Enhancers	Brain Cingulate Gyrus	brain
24	chr21:48054400-48054800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr21:48054400-48054800	Flanking Active TSS	Brain Substantia Nigra	brain
26	chr21:48054400-48054800	Enhancers	Colonic Mucosa	Colon
27	chr21:48054400-48054800	Enhancers	Placenta	Placenta
28	chr21:48054400-48054800	Enhancers	Pancreas	Pancrea
29	chr21:48054400-48054800	Flanking Active TSS	Rectal Smooth Muscle	rectum
30	chr21:48054400-48054800	Enhancers	HMEC	breast
31	chr21:48054400-48055000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr21:48054400-48055000	Flanking Active TSS	K562	blood
33	chr21:48054400-48055200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
34	chr21:48054400-48055200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr21:48054400-48055200	Flanking Active TSS	Adipose Nuclei	Adipose
36	chr21:48054400-48055200	Flanking Active TSS	Dnd41	blood
37	chr21:48054400-48055200	Flanking Active TSS	Hela-S3	cervix
38	chr21:48054400-48055600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr21:48054400-48056200	Active TSS	Brain Anterior Caudate	brain
40	chr21:48054600-48054800	Active TSS	iPS-18 Cell Line	embryonic stem cell
41	chr21:48054600-48054800	Enhancers	Primary B cells from peripheral blood	blood
42	chr21:48054600-48054800	Enhancers	Primary hematopoietic stem cells	blood
43	chr21:48054600-48054800	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr21:48054600-48054800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr21:48054600-48054800	Flanking Active TSS	Brain Germinal Matrix	brain
46	chr21:48054600-48054800	Flanking Active TSS	Colon Smooth Muscle	Colon
47	chr21:48054600-48054800	Enhancers	Fetal Heart	heart
48	chr21:48054600-48054800	Enhancers	Fetal Intestine Large	intestine
49	chr21:48054600-48054800	Enhancers	Fetal Muscle Leg	muscle
50	chr21:48054600-48054800	Flanking Active TSS	Thymus	Thymus

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