Variant report

Variant	rs11089491
Chromosome Location	chr22:31592698-31592699
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1034587	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10428007	0.89[ASN][1000 genomes]
rs1123705	0.80[AMR][1000 genomes]
rs12106582	0.81[ASN][1000 genomes]
rs12627941	0.83[ASN][1000 genomes]
rs12628752	0.92[ASN][1000 genomes]
rs17220369	0.89[ASN][1000 genomes]
rs2073858	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2239905	0.87[ASN][1000 genomes]
rs2239906	0.87[ASN][1000 genomes]
rs2267169	0.83[ASN][1000 genomes]
rs2267170	0.83[ASN][1000 genomes]
rs2267171	0.89[ASN][1000 genomes]
rs2283878	0.89[ASN][1000 genomes]
rs2283880	0.84[ASN][1000 genomes]
rs2413041	0.92[ASN][1000 genomes]
rs28709894	0.81[ASN][1000 genomes]
rs34184692	0.93[ASN][1000 genomes]
rs4561750	0.81[ASN][1000 genomes]
rs4615	0.83[ASN][1000 genomes]
rs4618154	0.89[EUR][1000 genomes]
rs4820952	0.86[ASN][1000 genomes]
rs4820965	0.83[ASN][1000 genomes]
rs55737363	0.81[ASN][1000 genomes]
rs55900008	0.91[ASN][1000 genomes]
rs56292834	0.80[AMR][1000 genomes]
rs5749226	0.81[ASN][1000 genomes]
rs5749231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5749232	0.93[ASN][1000 genomes]
rs5749237	0.89[ASN][1000 genomes]
rs5749244	0.88[ASN][1000 genomes]
rs5749246	0.86[EUR][1000 genomes]
rs5753518	0.88[ASN][1000 genomes]
rs5753528	0.89[ASN][1000 genomes]
rs5753531	0.82[ASN][1000 genomes]
rs5753550	0.85[ASN][1000 genomes]
rs5753551	0.85[ASN][1000 genomes]
rs5753560	0.83[ASN][1000 genomes]
rs5997940	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61006749	0.92[ASN][1000 genomes]
rs62237396	0.81[ASN][1000 genomes]
rs62237398	0.81[ASN][1000 genomes]
rs62237399	0.81[ASN][1000 genomes]
rs62237400	0.81[ASN][1000 genomes]
rs62237404	0.93[ASN][1000 genomes]
rs62237436	0.90[ASN][1000 genomes]
rs68136222	0.89[ASN][1000 genomes]
rs72617294	0.88[ASN][1000 genomes]
rs72617295	0.84[ASN][1000 genomes]
rs730286	0.95[EUR][1000 genomes]
rs73158522	0.89[ASN][1000 genomes]
rs737809	0.89[ASN][1000 genomes]
rs886074	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459871	chr22:31551160-31680624	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
2	nsv588893	chr22:31551160-31680624	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1067003	chr22:31558663-31697093	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31557400-31595200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr22:31557400-31597800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr22:31558800-31606000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr22:31570000-31606400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr22:31570400-31597800	Weak transcription	HUVEC	blood vessel
6	chr22:31572200-31600000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr22:31574400-31601600	Weak transcription	Fetal Heart	heart
8	chr22:31575800-31602600	Weak transcription	Stomach Mucosa	stomach
9	chr22:31575800-31607600	Weak transcription	Hela-S3	cervix
10	chr22:31576000-31607800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr22:31576000-31607800	Weak transcription	A549	lung
12	chr22:31579200-31607400	Weak transcription	K562	blood
13	chr22:31580800-31607600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr22:31581000-31592800	Strong transcription	Fetal Muscle Leg	muscle
15	chr22:31581000-31593000	Strong transcription	Primary T cells from cord blood	blood
16	chr22:31581000-31599200	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr22:31581400-31607800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr22:31582400-31602400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr22:31582600-31594000	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr22:31582800-31594200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr22:31582800-31603600	Strong transcription	Liver	Liver
22	chr22:31583000-31598800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr22:31584000-31608200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr22:31584800-31595200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr22:31584800-31597800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr22:31585600-31593000	Strong transcription	Fetal Intestine Large	intestine
27	chr22:31585600-31599200	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr22:31585600-31599800	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr22:31585600-31601200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr22:31586000-31593000	Strong transcription	Primary B cells from cord blood	blood
31	chr22:31586000-31603800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr22:31586400-31595200	Weak transcription	HMEC	breast
33	chr22:31586600-31592800	Strong transcription	Thymus	Thymus
34	chr22:31587000-31599200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr22:31587000-31602200	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr22:31587600-31596000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr22:31588000-31593000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr22:31588200-31606600	Strong transcription	Fetal Stomach	stomach
39	chr22:31588400-31592800	Strong transcription	Fetal Brain Female	brain
40	chr22:31588400-31594200	Strong transcription	Fetal Muscle Trunk	muscle
41	chr22:31588400-31603400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr22:31588600-31593000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr22:31588600-31599800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr22:31588600-31606400	Strong transcription	Fetal Intestine Small	intestine
45	chr22:31588800-31594200	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr22:31589000-31593800	Strong transcription	HepG2	liver
47	chr22:31589000-31594000	Strong transcription	HSMMtube	muscle
48	chr22:31589000-31607200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr22:31589200-31602200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr22:31589400-31593600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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