Variant report

Variant	rs11089501
Chromosome Location	chr22:31815956-31815957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	22:31807204-31822350..22:31836635-31847259	K562	blood:
2	chr22:31811900..31813943-chr22:31814230..31817228,2	MCF-7	breast:
3	22:31807204-31822350..22:32292186-32294405	K562	blood:
4	22:31807204-31822350..22:32012966-32043914	K562	blood:
5	22:31807204-31822350..22:31978142-31983723	GM12878	blood:

Variant related genes	Relation type
ENSG00000100150	Chromatin interaction
ENSG00000184708	Chromatin interaction
ENSG00000198089	Chromatin interaction
ENSG00000241878	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10483159	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11089502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11089503	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11089504	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12165685	1.00[EUR][1000 genomes]
rs12168242	1.00[EUR][1000 genomes]
rs12169794	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12484646	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12484775	1.00[EUR][1000 genomes]
rs12484966	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12485176	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12485177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17820958	1.00[EUR][1000 genomes]
rs17821132	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1859677	1.00[EUR][1000 genomes]
rs1968024	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2073856	1.00[EUR][1000 genomes]
rs2073859	1.00[EUR][1000 genomes]
rs2073860	1.00[EUR][1000 genomes]
rs2073861	1.00[EUR][1000 genomes]
rs2158779	1.00[EUR][1000 genomes]
rs2240424	1.00[EUR][1000 genomes]
rs2267168	1.00[EUR][1000 genomes]
rs2273248	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2283882	1.00[EUR][1000 genomes]
rs2295240	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28678535	1.00[EUR][1000 genomes]
rs28872513	1.00[EUR][1000 genomes]
rs35208364	0.87[AMR][1000 genomes]
rs3747153	1.00[EUR][1000 genomes]
rs3747154	1.00[EUR][1000 genomes]
rs3747155	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3788434	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5749233	1.00[EUR][1000 genomes]
rs5749236	1.00[EUR][1000 genomes]
rs5749239	1.00[EUR][1000 genomes]
rs5749240	1.00[EUR][1000 genomes]
rs5749247	1.00[EUR][1000 genomes]
rs5749252	1.00[EUR][1000 genomes]
rs5749255	1.00[EUR][1000 genomes]
rs5749258	1.00[EUR][1000 genomes]
rs5749262	1.00[EUR][1000 genomes]
rs5749263	1.00[EUR][1000 genomes]
rs5753506	1.00[EUR][1000 genomes]
rs5753509	1.00[EUR][1000 genomes]
rs5753511	1.00[EUR][1000 genomes]
rs5753512	1.00[EUR][1000 genomes]
rs5753513	1.00[EUR][1000 genomes]
rs5753516	1.00[EUR][1000 genomes]
rs5753519	1.00[EUR][1000 genomes]
rs5753525	1.00[EUR][1000 genomes]
rs5753526	1.00[EUR][1000 genomes]
rs5753527	1.00[EUR][1000 genomes]
rs5753529	1.00[EUR][1000 genomes]
rs5753532	1.00[EUR][1000 genomes]
rs5753534	1.00[EUR][1000 genomes]
rs5753535	1.00[EUR][1000 genomes]
rs5753540	1.00[EUR][1000 genomes]
rs5753555	1.00[EUR][1000 genomes]
rs5753556	1.00[EUR][1000 genomes]
rs5753566	1.00[EUR][1000 genomes]
rs5753569	1.00[EUR][1000 genomes]
rs5753571	1.00[EUR][1000 genomes]
rs5753572	1.00[EUR][1000 genomes]
rs58856347	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58915086	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs59416609	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7292620	1.00[EUR][1000 genomes]
rs73396257	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9619178	1.00[EUR][1000 genomes]
rs9621215	1.00[EUR][1000 genomes]
rs9621220	1.00[EUR][1000 genomes]
rs9621226	1.00[EUR][1000 genomes]
rs9621236	1.00[EUR][1000 genomes]
rs9621247	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9621252	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9621261	1.00[EUR][1000 genomes]
rs9621263	0.80[AMR][1000 genomes]
rs9621264	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621265	1.00[EUR][1000 genomes]
rs9621270	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834176	chr22:31682426-31864701	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	nsv1063634	chr22:31797004-31921254	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31796600-31821200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr22:31796600-31830000	Weak transcription	Stomach Mucosa	stomach
3	chr22:31796800-31822400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr22:31796800-31835600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr22:31797000-31832000	Strong transcription	Fetal Muscle Leg	muscle
6	chr22:31797000-31836600	Strong transcription	Placenta	Placenta
7	chr22:31797000-31884400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr22:31797000-31884400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr22:31797200-31817000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr22:31797200-31826800	Strong transcription	Liver	Liver
11	chr22:31797200-31832600	Strong transcription	Fetal Intestine Small	intestine
12	chr22:31797200-31845400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr22:31797200-31846200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr22:31797200-31846400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr22:31797200-31860600	Strong transcription	Fetal Stomach	stomach
16	chr22:31797400-31821200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr22:31797400-31846800	Strong transcription	Duodenum Mucosa	Duodenum
18	chr22:31797600-31828000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr22:31797600-31835800	Strong transcription	Fetal Muscle Trunk	muscle
20	chr22:31797800-31821600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr22:31797800-31832200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr22:31797800-31844800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr22:31797800-31846800	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr22:31798000-31831800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr22:31798200-31827000	Strong transcription	Stomach Smooth Muscle	stomach
26	chr22:31798200-31831200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr22:31798600-31821000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr22:31799000-31845400	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr22:31799200-31846600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr22:31800200-31821000	Weak transcription	Fetal Brain Male	brain
31	chr22:31803200-31816400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr22:31803400-31822000	Weak transcription	Fetal Heart	heart
33	chr22:31803600-31844600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr22:31804600-31847000	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr22:31805000-31844800	Strong transcription	Primary B cells from peripheral blood	blood
36	chr22:31805600-31844800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr22:31806800-31842400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr22:31807400-31816400	Weak transcription	A549	lung
39	chr22:31807800-31821400	Weak transcription	Right Ventricle	heart
40	chr22:31807800-31822200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr22:31809600-31818600	Weak transcription	Hela-S3	cervix
42	chr22:31810400-31816200	Weak transcription	Brain Substantia Nigra	brain
43	chr22:31811000-31816200	Weak transcription	Primary B cells from cord blood	blood
44	chr22:31811000-31817000	Weak transcription	Small Intestine	intestine
45	chr22:31811200-31816200	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr22:31811200-31816400	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr22:31811200-31818200	Weak transcription	Colonic Mucosa	Colon
48	chr22:31812000-31818800	Weak transcription	K562	blood
49	chr22:31812000-31842000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr22:31812200-31816200	Weak transcription	Brain Germinal Matrix	brain

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