Variant report

Variant	rs11095003
Chromosome Location	chrX:6105551-6105552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949481	chrX:5883977-6401143	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv533221	chrX:5970948-6352423	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv948484	chrX:6057749-6401143	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:6069800-6132400	Weak transcription	Fetal Thymus	thymus
2	chrX:6083600-6119200	Strong transcription	Dnd41	blood
3	chrX:6088400-6119200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chrX:6093400-6142000	Weak transcription	Brain Germinal Matrix	brain
5	chrX:6095200-6141800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chrX:6098600-6107000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chrX:6100200-6107600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chrX:6102200-6106200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chrX:6103200-6122800	Weak transcription	Fetal Brain Female	brain
10	chrX:6103800-6106400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chrX:6104000-6106000	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chrX:6104000-6106000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chrX:6104200-6105600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chrX:6104800-6119200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chrX:6105400-6105600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
16	chrX:6105400-6105600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
17	chrX:6105400-6105800	Strong transcription	H9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links