Variant report

Variant	rs1109552
Chromosome Location	chr7:128323034-128323035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:128319097..128321424-chr7:128321537..128323063,2	MCF-7	breast:
2	chr7:128320147..128324613-chr7:128325598..128330219,5	K562	blood:

Variant related genes	Relation type
ENSG00000270810	Chromatin interaction

Extended variants
information (count: 196 )
Associated
traits (count: 37 )

rSNPs within LD-proxies of this variant (count:195)

rs_ID	r²[population]
rs1003241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10085580	0.85[EUR][1000 genomes]
rs10215560	0.92[EUR][1000 genomes]
rs10215566	0.92[EUR][1000 genomes]
rs10215947	0.92[EUR][1000 genomes]
rs10229874	0.91[EUR][1000 genomes]
rs10237278	0.91[EUR][1000 genomes]
rs10276417	0.85[ASN][1000 genomes]
rs10464537	0.86[EUR][1000 genomes]
rs10464538	0.86[EUR][1000 genomes]
rs10954193	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes]
rs10954194	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10954195	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11971248	0.90[EUR][1000 genomes]
rs11973846	0.90[YRI][hapmap]
rs11975784	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11977129	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11979586	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12667202	0.87[EUR][1000 genomes]
rs12670258	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12670271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12670432	0.87[EUR][1000 genomes]
rs12671767	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12672443	0.87[EUR][1000 genomes]
rs12672518	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12672529	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12672576	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12672608	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12672940	0.82[EUR][1000 genomes]
rs12673048	0.83[EUR][1000 genomes]
rs12673060	0.87[EUR][1000 genomes]
rs12673998	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12674125	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12706856	0.89[ASN][1000 genomes]
rs12706857	0.88[ASN][1000 genomes]
rs13438170	0.91[EUR][1000 genomes]
rs1450874	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17169024	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17169357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17169368	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17169609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17533628	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1809082	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1839593	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1839594	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1970827	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1970828	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2044834	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2290229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2402907	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2443110	0.86[EUR][1000 genomes]
rs3213979	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34614236	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35394926	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3857849	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3896308	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3927852	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3931943	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4077398	0.84[EUR][1000 genomes]
rs4079001	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4079003	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4260830	0.89[EUR][1000 genomes]
rs4283986	0.89[LWK][hapmap]
rs4554406	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4562239	0.87[EUR][1000 genomes]
rs4579449	0.87[EUR][1000 genomes]
rs4728123	0.83[EUR][1000 genomes]
rs4728128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4728130	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731482	0.84[EUR][1000 genomes]
rs4731484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes]
rs4731486	0.91[EUR][1000 genomes]
rs4731488	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4731492	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4731493	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4731494	0.82[ASN][1000 genomes]
rs4731496	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4731497	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4731500	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4731501	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4731503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731504	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731505	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4731506	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731507	0.89[LWK][hapmap]
rs4731508	0.89[LWK][hapmap]
rs55860694	0.88[EUR][1000 genomes]
rs55978216	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55982013	0.87[EUR][1000 genomes]
rs56030011	0.87[EUR][1000 genomes]
rs56052829	0.89[EUR][1000 genomes]
rs56111366	0.88[EUR][1000 genomes]
rs56189614	0.90[EUR][1000 genomes]
rs56208431	0.81[EUR][1000 genomes]
rs56278047	0.89[EUR][1000 genomes]
rs56329625	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56333646	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs56916616	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56946745	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57226192	0.89[EUR][1000 genomes]
rs57370656	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57653865	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57886720	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58123072	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58133562	0.87[EUR][1000 genomes]
rs58961149	0.83[EUR][1000 genomes]
rs59066415	0.87[EUR][1000 genomes]
rs59154282	0.90[EUR][1000 genomes]
rs59594227	0.87[EUR][1000 genomes]
rs60229418	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60473286	0.86[EUR][1000 genomes]
rs60515997	0.87[EUR][1000 genomes]
rs60781570	0.86[EUR][1000 genomes]
rs60804557	0.83[EUR][1000 genomes]
rs61146845	0.87[EUR][1000 genomes]
rs61312980	0.87[EUR][1000 genomes]
rs61318942	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61544090	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61738927	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62479751	0.90[EUR][1000 genomes]
rs62479756	0.89[EUR][1000 genomes]
rs62479757	0.89[EUR][1000 genomes]
rs62481868	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62481869	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62481873	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62481883	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62481890	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62481892	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62481895	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62481897	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62481901	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62481902	0.85[EUR][1000 genomes]
rs62481906	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62481907	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62481926	0.81[AMR][1000 genomes]
rs62481938	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62481939	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62481940	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62483286	0.85[EUR][1000 genomes]
rs62483293	0.81[EUR][1000 genomes]
rs62483298	0.86[EUR][1000 genomes]
rs62483302	0.87[EUR][1000 genomes]
rs62483305	0.87[EUR][1000 genomes]
rs62483342	0.85[EUR][1000 genomes]
rs62483348	0.84[EUR][1000 genomes]
rs62483363	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62483364	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62483366	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62483368	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6467185	0.88[EUR][1000 genomes]
rs6467186	0.87[EUR][1000 genomes]
rs6467188	0.91[EUR][1000 genomes]
rs6467189	0.91[EUR][1000 genomes]
rs6467194	0.90[EUR][1000 genomes]
rs6467195	0.92[EUR][1000 genomes]
rs6467196	0.90[EUR][1000 genomes]
rs6467197	0.85[EUR][1000 genomes]
rs6467198	0.85[EUR][1000 genomes]
rs6467202	0.87[CHB][hapmap];0.98[CHD][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs6467203	0.87[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs6467204	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6467206	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6467209	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6467210	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67602452	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6945126	0.85[ASN][1000 genomes]
rs6945532	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6950635	0.85[EUR][1000 genomes]
rs6954284	0.90[EUR][1000 genomes]
rs6954404	0.90[EUR][1000 genomes]
rs6958788	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6969462	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6969528	0.85[EUR][1000 genomes]
rs6969554	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6973969	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6974153	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6978887	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6979304	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs6979575	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs73233862	0.85[EUR][1000 genomes]
rs73236020	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73236037	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7385007	0.89[EUR][1000 genomes]
rs7385683	0.87[EUR][1000 genomes]
rs7781695	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7786336	0.87[EUR][1000 genomes]
rs7792915	0.92[EUR][1000 genomes]
rs7793136	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes]
rs7797745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7802149	0.82[EUR][1000 genomes]
rs9640850	0.84[EUR][1000 genomes]
rs9641823	0.84[EUR][1000 genomes]
rs9641824	0.84[EUR][1000 genomes]
rs9641826	0.86[EUR][1000 genomes]
rs9641827	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427806	chr7:128179989-128428182	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

mRNA abundance (count:37)

SNP	Gene	Cis/trans	Tissue	Source
rs1109552	RP11-274B21.1	cis	Stomach	GTEx
rs1109552	METTL2B	cis	Skin Sun Exposed Lower leg	GTEx
rs1109552	RP11-274B21.2	cis	Nerve Tibial	GTEx
rs1109552	RP11-274B21.4	cis	Muscle Skeletal	GTEx
rs1109552	RP11-274B21.4	cis	Whole Blood	GTEx
rs1109552	RP11-274B21.4	cis	Stomach	GTEx
rs1109552	RP11-274B21.2	cis	Muscle Skeletal	GTEx
rs1109552	RP11-274B21.1	cis	Artery Aorta	GTEx
rs1109552	RP11-274B21.4	cis	Skin Sun Exposed Lower leg	GTEx
rs1109552	METTL2B	cis	parietal	SCAN
rs1109552	RP11-274B21.3	cis	Muscle Skeletal	GTEx
rs1109552	CPA4	cis	cerebellum	SCAN
rs1109552	RP11-274B21.1	cis	Skin Sun Exposed Lower leg	GTEx
rs1109552	RP11-274B21.1	cis	Nerve Tibial	GTEx
rs1109552	RP11-274B21.2	cis	lung	GTEx
rs1109552	RP11-274B21.4	cis	Esophagus Muscularis	GTEx
rs1109552	RP11-274B21.2	cis	Adipose Subcutaneous	GTEx
rs1109552	RP11-274B21.1	cis	Whole Blood	GTEx
rs1109552	RP11-274B21.1	cis	Artery Tibial	GTEx
rs1109552	RP11-274B21.2	cis	Skin Sun Exposed Lower leg	GTEx
rs1109552	GSTM3	trans	lymphoblastoid	seeQTL
rs1109552	RP11-274B21.4	cis	Artery Tibial	GTEx
rs1109552	RP11-274B21.2	cis	Esophagus Muscularis	GTEx
rs1109552	RP11-274B21.4	cis	Nerve Tibial	GTEx
rs1109552	RP11-274B21.4	cis	lung	GTEx
rs1109552	RP11-274B21.2	cis	Artery Tibial	GTEx
rs1109552	RP11-274B21.1	cis	Muscle Skeletal	GTEx
rs1109552	RP11-274B21.4	cis	Adipose Subcutaneous	GTEx
rs1109552	RP11-274B21.1	cis	lung	GTEx
rs1109552	RP11-274B21.4	cis	Thyroid	GTEx
rs1109552	RP11-274B21.1	cis	Thyroid	GTEx
rs1109552	RP11-274B21.9	cis	Esophagus Mucosa	GTEx
rs1109552	RP11-274B21.2	cis	Stomach	GTEx
rs1109552	RP11-274B21.10	cis	Whole Blood	GTEx
rs1109552	RP11-274B21.4	cis	Esophagus Mucosa	GTEx
rs1109552	RP11-274B21.1	cis	Adipose Subcutaneous	GTEx
rs1109552	RP11-274B21.1	cis	Esophagus Muscularis	GTEx

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128294800-128328000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr7:128295000-128325200	Weak transcription	Brain Hippocampus Middle	brain
3	chr7:128295400-128325400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:128298600-128329200	Weak transcription	Pancreas	Pancrea
5	chr7:128302400-128323200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:128302400-128323200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr7:128302400-128324000	Weak transcription	Aorta	Aorta
8	chr7:128302400-128337200	Weak transcription	Gastric	stomach
9	chr7:128302600-128327800	Weak transcription	Placenta	Placenta
10	chr7:128308400-128323800	Weak transcription	A549	lung
11	chr7:128310000-128329400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:128310600-128323200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:128311200-128327000	Weak transcription	HSMM	muscle
14	chr7:128311600-128327800	Weak transcription	Brain Substantia Nigra	brain
15	chr7:128312400-128325400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr7:128312600-128325400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:128313200-128325200	Weak transcription	Ovary	ovary
18	chr7:128313400-128329400	Weak transcription	Esophagus	oesophagus
19	chr7:128313400-128331200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr7:128313600-128327200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr7:128313600-128327600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr7:128313600-128337200	Weak transcription	Right Atrium	heart
23	chr7:128318200-128327600	Weak transcription	NHEK	skin
24	chr7:128318200-128328000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr7:128318400-128325800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr7:128318600-128324200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr7:128319200-128325000	Weak transcription	Small Intestine	intestine
28	chr7:128319400-128328000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr7:128319800-128328000	Weak transcription	Fetal Intestine Small	intestine
30	chr7:128320200-128332000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:128320200-128337200	Weak transcription	NHLF	lung
32	chr7:128320400-128325400	Weak transcription	Right Ventricle	heart
33	chr7:128320400-128331000	Weak transcription	Brain Angular Gyrus	brain
34	chr7:128320400-128331000	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr7:128320800-128329400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr7:128321000-128332000	Weak transcription	Fetal Brain Male	brain
37	chr7:128321400-128325600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr7:128321600-128324400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr7:128321800-128325600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr7:128321800-128328000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr7:128322000-128324400	Strong transcription	Osteobl	bone
42	chr7:128322000-128325800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr7:128322000-128328000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr7:128322200-128323400	Strong transcription	HSMMtube	muscle
45	chr7:128322200-128328800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr7:128322200-128333000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr7:128322400-128324800	Strong transcription	Fetal Muscle Trunk	muscle
48	chr7:128322400-128326000	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr7:128322600-128323400	Strong transcription	Brain Anterior Caudate	brain
50	chr7:128322600-128323400	Strong transcription	NH-A	brain

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