Variant report

Variant	rs11097110
Chromosome Location	chr4:87370136-87370137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:87369233..87370934-chr4:87373107..87374664,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109339	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12507758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4693771	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7679269	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594786	chr4:87076360-87609320	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv999470	chr4:87165663-87514552	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537164	chr4:87165663-87514552	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv1012836	chr4:87279206-87643558	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87342000-87372800	Weak transcription	Aorta	Aorta
2	chr4:87354600-87374000	Weak transcription	Pancreas	Pancrea
3	chr4:87363000-87370800	Weak transcription	Fetal Kidney	kidney
4	chr4:87363400-87370800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:87364800-87370200	Weak transcription	Right Atrium	heart
6	chr4:87365000-87370600	Weak transcription	Brain Substantia Nigra	brain
7	chr4:87365000-87372600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:87365600-87371800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr4:87367600-87370600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr4:87368600-87372800	Weak transcription	Brain Hippocampus Middle	brain
11	chr4:87369600-87371400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr4:87369800-87370400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:87369800-87370400	Enhancers	Fetal Stomach	stomach
14	chr4:87369800-87375600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr4:87370000-87370400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr4:87370000-87370400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr4:87370000-87370400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr4:87370000-87370600	Enhancers	Ovary	ovary
19	chr4:87370000-87370600	Active TSS	Stomach Smooth Muscle	stomach
20	chr4:87370000-87370600	Enhancers	Dnd41	blood
21	chr4:87370000-87371000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:87370000-87372200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr4:87370000-87375400	Enhancers	HUES6 Cell Line	embryonic stem cell

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