Variant report

Variant	rs11097111
Chromosome Location	chr4:87399112-87399113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12503051	0.85[ASN][1000 genomes]
rs12649400	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17011950	0.95[ASN][1000 genomes]
rs2869444	0.91[ASN][1000 genomes]
rs4488910	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594786	chr4:87076360-87609320	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv999470	chr4:87165663-87514552	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537164	chr4:87165663-87514552	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv1012836	chr4:87279206-87643558	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87394200-87399800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:87394200-87405600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:87395000-87400000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:87395000-87400800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:87395200-87400200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:87395200-87401400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:87395600-87400800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr4:87396000-87399200	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr4:87396400-87401000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr4:87397200-87401800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:87397200-87402000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr4:87399000-87399600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
13	chr4:87399000-87399600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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