Variant report

Variant	rs11097281
Chromosome Location	chr4:91871762-91871763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10005295	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1381298	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1454334	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1461596	0.92[EUR][1000 genomes]
rs1599455	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1947442	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs4693252	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879555	chr4:91743538-91967602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv10533	chr4:91842776-91935992	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv594834	chr4:91866171-91872431	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91871000-91872200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:91871000-91872200	Enhancers	Fetal Intestine Large	intestine
3	chr4:91871000-91872200	Enhancers	Fetal Intestine Small	intestine
4	chr4:91871200-91872000	Flanking Active TSS	Hela-S3	cervix
5	chr4:91871400-91871800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr4:91871400-91872000	Enhancers	Fetal Heart	heart
7	chr4:91871400-91872600	Flanking Active TSS	HUVEC	blood vessel
8	chr4:91871600-91871800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:91871600-91871800	Flanking Active TSS	Aorta	Aorta
10	chr4:91871600-91871800	Enhancers	Pancreas	Pancrea
11	chr4:91871600-91871800	Flanking Active TSS	A549	lung
12	chr4:91871600-91872000	Enhancers	Fetal Lung	lung
13	chr4:91871600-91872200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr4:91871600-91872200	Enhancers	Duodenum Mucosa	Duodenum
15	chr4:91871600-91872200	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr4:91871600-91872200	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr4:91871600-91872400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr4:91871600-91872400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:91871600-91872600	Enhancers	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links