Variant report

Variant	rs11097627
Chromosome Location	chr4:99564560-99564561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99551429..99553596-chr4:99563119..99565613,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10856938	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12505872	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12509052	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12509185	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13102356	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1881449	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61519543	0.83[EUR][1000 genomes]
rs7660421	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs871474	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594940	chr4:99542475-99573350	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99548000-99569200	Weak transcription	Gastric	stomach
2	chr4:99548000-99577000	Weak transcription	Esophagus	oesophagus
3	chr4:99552600-99569600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:99552800-99569200	Weak transcription	Fetal Stomach	stomach
5	chr4:99554200-99569200	Weak transcription	Spleen	Spleen
6	chr4:99560200-99565600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:99560200-99569200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:99560600-99568000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr4:99560800-99566400	Weak transcription	Brain Germinal Matrix	brain
10	chr4:99560800-99568200	Weak transcription	Fetal Lung	lung
11	chr4:99561000-99564800	Weak transcription	Primary T cells from cord blood	blood
12	chr4:99561000-99566000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr4:99561200-99564800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr4:99561200-99565200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:99561200-99565400	Enhancers	NHDF-Ad	bronchial
16	chr4:99561200-99567000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr4:99561200-99567200	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr4:99561600-99564800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr4:99561600-99564800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr4:99562000-99565000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr4:99562000-99566000	Enhancers	Muscle Satellite Cultured Cells	--
22	chr4:99562000-99569200	Weak transcription	Fetal Brain Male	brain
23	chr4:99562600-99564800	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr4:99562600-99565000	Enhancers	Brain Hippocampus Middle	brain
25	chr4:99562600-99565200	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr4:99562800-99564600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr4:99562800-99564800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr4:99563000-99565200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr4:99563200-99564800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr4:99563200-99565200	Enhancers	HMEC	breast
31	chr4:99563200-99566400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr4:99563400-99566000	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr4:99563400-99566600	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr4:99563400-99567000	Weak transcription	Stomach Mucosa	stomach
35	chr4:99563600-99565200	Enhancers	HSMM	muscle
36	chr4:99563600-99565200	Enhancers	NHEK	skin
37	chr4:99563600-99565800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr4:99563600-99566600	Enhancers	HUVEC	blood vessel
39	chr4:99563800-99564800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr4:99563800-99564800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr4:99563800-99565200	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr4:99563800-99566000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr4:99564000-99565200	Enhancers	Osteobl	bone
44	chr4:99564000-99565400	Enhancers	Brain Substantia Nigra	brain
45	chr4:99564000-99566600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr4:99564000-99567200	Enhancers	Brain Angular Gyrus	brain
47	chr4:99564000-99571600	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr4:99564200-99564600	Enhancers	Fetal Heart	heart
49	chr4:99564200-99564600	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr4:99564200-99564600	Flanking Active TSS	NH-A	brain

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