Variant report

Variant	rs11097772
Chromosome Location	chr4:103215245-103215246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103213406..103215964-chr4:103215969..103217918,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10489122	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11725311	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11730750	0.88[ASN][1000 genomes]
rs11733504	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11734114	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11737763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1470115	0.88[ASN][1000 genomes]
rs1470116	0.88[ASN][1000 genomes]
rs2119213	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2165265	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2165266	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4698844	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4698845	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62327949	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72692219	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7654606	0.84[ASN][1000 genomes]
rs7655493	0.86[ASN][1000 genomes]
rs7694296	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7699390	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3465860	chr4:103213468-103217969	Strong transcription Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3465859	chr4:103213533-103217882	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3465861	chr4:103213605-103217840	ZNF genes & repeats Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103179400-103221000	Weak transcription	K562	blood
2	chr4:103181800-103230400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:103182000-103255400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr4:103184200-103220600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:103186600-103229600	Weak transcription	Pancreas	Pancrea
6	chr4:103186800-103216800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr4:103187200-103229400	Weak transcription	Fetal Thymus	thymus
8	chr4:103189000-103216800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr4:103189200-103225400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr4:103189400-103218600	Weak transcription	Placenta	Placenta
11	chr4:103189800-103232400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:103196200-103242400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr4:103199400-103221000	Weak transcription	Ovary	ovary
14	chr4:103200800-103217600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr4:103201000-103220000	Weak transcription	GM12878-XiMat	blood
16	chr4:103203600-103226400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr4:103204000-103228400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr4:103207600-103221200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:103208200-103220600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr4:103209800-103221200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr4:103210400-103220000	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr4:103210400-103256800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr4:103211200-103216600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr4:103211200-103217800	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr4:103212000-103218800	Weak transcription	Primary B cells from cord blood	blood
26	chr4:103212000-103226200	Weak transcription	Brain Hippocampus Middle	brain
27	chr4:103212200-103217600	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr4:103212600-103216400	Weak transcription	Liver	Liver
29	chr4:103212800-103215600	Weak transcription	Primary hematopoietic stem cells	blood
30	chr4:103212800-103215800	Weak transcription	Hela-S3	cervix
31	chr4:103213000-103215600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr4:103213000-103217800	Weak transcription	Primary T cells from cord blood	blood
33	chr4:103213800-103216400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr4:103213800-103216400	Weak transcription	Dnd41	blood
35	chr4:103214000-103216600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr4:103214200-103224200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr4:103214800-103217600	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr4:103214800-103243200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr4:103215200-103219600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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