Variant report

Variant	rs11097909
Chromosome Location	chr4:106911321-106911322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106909185..106911956-chr4:106914029..106916741,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10000111	0.99[ASN][1000 genomes]
rs10001483	0.90[ASN][1000 genomes]
rs11097910	0.99[ASN][1000 genomes]
rs12503341	0.96[ASN][1000 genomes]
rs4142418	0.97[ASN][1000 genomes]
rs57045702	1.00[ASN][1000 genomes]
rs6841386	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv522792	chr4:106895964-106982793	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106907800-106925000	Weak transcription	Pancreas	Pancrea
2	chr4:106909600-106911400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:106909800-106913000	Enhancers	Aorta	Aorta
4	chr4:106909800-106913200	Enhancers	HUVEC	blood vessel
5	chr4:106910000-106913200	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr4:106910000-106913400	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr4:106910200-106911400	Weak transcription	Left Ventricle	heart
8	chr4:106910400-106912800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr4:106910400-106913400	Enhancers	Fetal Muscle Leg	muscle
10	chr4:106910600-106913200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr4:106910600-106913200	Enhancers	Fetal Heart	heart
12	chr4:106910600-106913200	Enhancers	Fetal Stomach	stomach
13	chr4:106910600-106913200	Enhancers	HSMM	muscle
14	chr4:106910800-106912200	Enhancers	Rectal Smooth Muscle	rectum
15	chr4:106910800-106912800	Enhancers	HMEC	breast
16	chr4:106910800-106913200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr4:106910800-106913200	Enhancers	Psoas Muscle	Psoas
18	chr4:106910800-106913200	Enhancers	HSMMtube	muscle
19	chr4:106911000-106911600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr4:106911000-106912200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:106911200-106912200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr4:106911200-106912600	Enhancers	NHDF-Ad	bronchial
23	chr4:106911200-106914000	Enhancers	Adipose Nuclei	Adipose

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