Variant report

Variant	rs11098084
Chromosome Location	chr4:79108498-79108499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11098085	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12645741	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13133150	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17003021	0.90[ASN][1000 genomes]
rs17003028	0.82[EUR][1000 genomes]
rs17003043	0.81[ASN][1000 genomes]
rs17420789	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4334780	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4558894	0.95[ASN][1000 genomes]
rs58427733	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58661619	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58889966	0.89[EUR][1000 genomes]
rs60419354	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62308027	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62308039	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv525530	chr4:79024524-79266563	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv879502	chr4:79052851-79144309	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1010782	chr4:79057839-79387207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv829977	chr4:79082318-79110300	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv999844	chr4:79092549-79165869	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79100200-79109200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:79100600-79111200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:79101000-79112200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr4:79103600-79116400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:79105200-79108800	Enhancers	Fetal Intestine Large	intestine
6	chr4:79105200-79108800	Enhancers	Fetal Intestine Small	intestine
7	chr4:79106600-79111200	Weak transcription	HepG2	liver
8	chr4:79106600-79115800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:79108200-79108800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:79108400-79108600	Enhancers	Pancreas	Pancrea
11	chr4:79108400-79109200	Enhancers	Psoas Muscle	Psoas
12	chr4:79108400-79111200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:79108400-79111400	Weak transcription	Fetal Kidney	kidney
14	chr4:79108400-79112200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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