Variant report

Variant	rs11098117
Chromosome Location	chr4:79177215-79177216
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10007562	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28413144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28505974	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28551669	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv525530	chr4:79024524-79266563	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1010782	chr4:79057839-79387207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv829978	chr4:79144453-79291868	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79144600-79179000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:79169200-79186200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:79169200-79187400	Weak transcription	HSMMtube	muscle
4	chr4:79169600-79187800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr4:79169800-79197400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:79169800-79213800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:79170400-79186000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:79173600-79177800	Strong transcription	HepG2	liver
9	chr4:79173800-79186200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr4:79173800-79187000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:79173800-79187400	Weak transcription	Fetal Stomach	stomach
12	chr4:79174200-79178000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr4:79174600-79178400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr4:79174600-79186000	Weak transcription	Fetal Lung	lung
15	chr4:79174600-79197400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr4:79174800-79177400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:79174800-79178600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
18	chr4:79174800-79214400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr4:79175000-79179000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr4:79175000-79179200	Strong transcription	H1 Cell Line	embryonic stem cell
21	chr4:79175000-79179800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr4:79175000-79187600	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr4:79175000-79188000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr4:79175200-79185800	Weak transcription	Fetal Kidney	kidney
25	chr4:79175400-79179000	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr4:79175400-79179200	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr4:79175400-79179200	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr4:79175800-79177400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr4:79176400-79191000	Weak transcription	Psoas Muscle	Psoas
30	chr4:79176600-79177400	Weak transcription	Pancreas	Pancrea
31	chr4:79176600-79183200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr4:79176600-79186200	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr4:79176600-79186200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr4:79176600-79186200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr4:79176600-79186200	Weak transcription	Fetal Intestine Large	intestine
36	chr4:79176600-79186600	Weak transcription	Fetal Intestine Small	intestine
37	chr4:79176600-79187200	Weak transcription	Left Ventricle	heart
38	chr4:79176600-79189200	Weak transcription	Fetal Heart	heart

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