Variant report

Variant	rs11098467
Chromosome Location	chr4:119896186-119896187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119890629..119893657-chr4:119893845..119896663,3	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1038771	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12502164	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1994628	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1994629	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4488925	0.95[EUR][1000 genomes]
rs56225827	0.88[EUR][1000 genomes]
rs6819572	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119886600-119896800	Enhancers	Rectal Smooth Muscle	rectum
2	chr4:119889800-119896200	Weak transcription	Fetal Thymus	thymus
3	chr4:119890400-119896400	Enhancers	Colon Smooth Muscle	Colon
4	chr4:119890600-119898200	Weak transcription	Fetal Stomach	stomach
5	chr4:119890800-119896200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr4:119890800-119896200	Weak transcription	HSMMtube	muscle
7	chr4:119892400-119897000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:119892600-119896800	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr4:119892800-119897000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr4:119893600-119896200	Weak transcription	Psoas Muscle	Psoas
11	chr4:119893600-119901400	Weak transcription	Ovary	ovary
12	chr4:119893600-119902600	Weak transcription	Right Atrium	heart
13	chr4:119893800-119897000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr4:119893800-119897000	Enhancers	Stomach Smooth Muscle	stomach
15	chr4:119894200-119897200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:119894200-119897200	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr4:119894600-119897000	Enhancers	NHDF-Ad	bronchial
18	chr4:119894800-119896400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr4:119895000-119897000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:119895000-119897200	Enhancers	Osteobl	bone
21	chr4:119895400-119896600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr4:119895400-119897400	Enhancers	Fetal Intestine Large	intestine
23	chr4:119895600-119896200	Weak transcription	Left Ventricle	heart
24	chr4:119895600-119896200	Weak transcription	Small Intestine	intestine
25	chr4:119895600-119896800	Enhancers	HMEC	breast
26	chr4:119895600-119896800	Enhancers	NHLF	lung
27	chr4:119895600-119897200	Enhancers	Fetal Intestine Small	intestine
28	chr4:119895800-119896400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr4:119895800-119896400	Enhancers	HUVEC	blood vessel
30	chr4:119895800-119896800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr4:119895800-119897000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr4:119896000-119896200	Enhancers	Muscle Satellite Cultured Cells	--
33	chr4:119896000-119896400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr4:119896000-119896400	Enhancers	Adipose Nuclei	Adipose
35	chr4:119896000-119896600	Enhancers	NH-A	brain
36	chr4:119896000-119896800	Enhancers	Right Ventricle	heart
37	chr4:119896000-119897000	Enhancers	Aorta	Aorta
38	chr4:119896000-119897000	Enhancers	Fetal Heart	heart

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