Variant report

Variant	rs1109856
Chromosome Location	chr12:120041067-120041068
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10744740	0.87[ASN][1000 genomes]
rs10744741	0.84[ASN][1000 genomes]
rs10744742	0.84[ASN][1000 genomes]
rs10774504	0.96[ASN][1000 genomes]
rs10774505	0.87[ASN][1000 genomes]
rs10849673	0.95[ASN][1000 genomes]
rs10849674	0.95[ASN][1000 genomes]
rs10849679	0.86[ASN][1000 genomes]
rs10849682	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10849683	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11064842	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11064843	0.85[ASN][1000 genomes]
rs11064855	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12425356	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12425649	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12425680	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12579854	0.97[ASN][1000 genomes]
rs12582735	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12708371	0.84[ASN][1000 genomes]
rs12825063	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12825555	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12827937	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1303904	0.84[ASN][1000 genomes]
rs1476453	0.87[ASN][1000 genomes]
rs1544329	0.81[EUR][1000 genomes]
rs2015795	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2157806	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2893796	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3847956	0.86[ASN][1000 genomes]
rs4767829	0.82[EUR][1000 genomes]
rs4767830	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4767831	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4767832	0.87[ASN][1000 genomes]
rs4767833	0.88[ASN][1000 genomes]
rs7295362	0.97[ASN][1000 genomes]
rs7306273	0.87[ASN][1000 genomes]
rs7310741	0.85[ASN][1000 genomes]
rs739423	0.87[ASN][1000 genomes]
rs7954674	0.97[ASN][1000 genomes]
rs7955433	0.97[ASN][1000 genomes]
rs7957284	0.84[ASN][1000 genomes]
rs7965791	0.84[ASN][1000 genomes]
rs7978341	0.84[ASN][1000 genomes]
rs7981024	0.84[ASN][1000 genomes]
rs9634163	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9634174	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916688	chr12:119801814-120044407	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv832529	chr12:119863378-120071646	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1052595	chr12:119992580-120132038	Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv541616	chr12:119992580-120132038	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120034600-120048200	Weak transcription	HSMMtube	muscle
2	chr12:120036600-120046000	Weak transcription	HSMM	muscle
3	chr12:120036600-120049000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr12:120040200-120041400	Weak transcription	Gastric	stomach
5	chr12:120040200-120042400	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr12:120040200-120042600	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr12:120040400-120042000	Enhancers	Psoas Muscle	Psoas

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