Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10049815	0.82[EUR][1000 genomes]
rs11098576	0.95[AFR][1000 genomes]
rs11098577	0.86[AFR][1000 genomes]
rs11098579	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11723874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12510575	0.82[EUR][1000 genomes]
rs12646912	0.80[EUR][1000 genomes]
rs12651230	0.81[AFR][1000 genomes]
rs1488061	0.81[EUR][1000 genomes]
rs1496257	0.81[AFR][1000 genomes]
rs1532055	0.82[EUR][1000 genomes]
rs1566022	0.89[AFR][1000 genomes]
rs28428468	0.81[EUR][1000 genomes]
rs28612298	0.81[EUR][1000 genomes]
rs36072791	0.99[ASN][1000 genomes]
rs4254801	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4351039	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4833170	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56350721	0.89[AFR][1000 genomes]
rs61607732	0.81[EUR][1000 genomes]
rs6813022	0.89[AFR][1000 genomes]
rs6835273	0.89[AFR][1000 genomes]
rs7674032	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9684033	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007641	chr4:120884220-121555889	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv537234	chr4:120884220-121555889	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv879853	chr4:121292665-121513215	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv879854	chr4:121457685-121489983	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121483800-121490200	Weak transcription	Fetal Lung	lung

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