Variant report

Variant	rs11101083
Chromosome Location	chr10:50514253-50514254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11101081	0.81[GIH][hapmap];0.91[TSI][hapmap]
rs12414824	1.00[JPT][hapmap]
rs12415154	0.88[JPT][hapmap]
rs12415544	0.87[JPT][hapmap]
rs2292200	0.88[JPT][hapmap]
rs2377940	0.88[JPT][hapmap]
rs4838383	0.88[JPT][hapmap]
rs4838493	0.88[JPT][hapmap]
rs4838494	0.88[JPT][hapmap]
rs56891309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895376	chr10:50480164-50557211	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50508800-50514400	Enhancers	Psoas Muscle	Psoas
2	chr10:50509200-50515400	Enhancers	Right Ventricle	heart
3	chr10:50509200-50517000	Weak transcription	Pancreas	Pancrea
4	chr10:50509400-50515200	Enhancers	Left Ventricle	heart
5	chr10:50512000-50515600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:50512000-50519200	Weak transcription	Right Atrium	heart
7	chr10:50512400-50517000	Weak transcription	K562	blood
8	chr10:50512600-50515600	Weak transcription	Fetal Muscle Leg	muscle
9	chr10:50513200-50516400	Genic enhancers	Skeletal Muscle Female	skeletal muscle
10	chr10:50513800-50522000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
11	chr10:50514000-50517000	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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