Variant report

Variant	rs11101389
Chromosome Location	chr10:49787537-49787538
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49781506..49783468-chr10:49787135..49789633,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1075808	0.82[ASN][1000 genomes]
rs1075809	1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs1075810	1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs10776626	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10857604	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10857605	0.97[ASN][1000 genomes]
rs10857606	0.95[CEU][hapmap]
rs1107998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12243298	1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs12243359	0.97[ASN][1000 genomes]
rs2289808	0.95[CEU][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7071547	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085667	1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs7086059	1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs7086075	1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs7098855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs877642	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs877643	1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv550815	chr10:49774633-49794481	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv550816	chr10:49782417-49794481	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49773200-49787800	Weak transcription	Brain Angular Gyrus	brain
2	chr10:49779400-49788000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr10:49782800-49790200	Weak transcription	Aorta	Aorta
4	chr10:49783000-49788400	Enhancers	Primary B cells from cord blood	blood
5	chr10:49783200-49787800	Enhancers	Primary B cells from peripheral blood	blood
6	chr10:49783200-49787800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr10:49784000-49788000	Weak transcription	HUVEC	blood vessel
8	chr10:49784400-49787600	Weak transcription	Brain Anterior Caudate	brain
9	chr10:49784400-49787600	Weak transcription	Placenta	Placenta
10	chr10:49786200-49787800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr10:49786200-49787800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr10:49786200-49788000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:49786200-49788200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:49786200-49788200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:49786200-49788400	Genic enhancers	NHLF	lung
16	chr10:49786200-49789000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:49786200-49789000	Enhancers	Colon Smooth Muscle	Colon
18	chr10:49786200-49792800	Enhancers	Brain Substantia Nigra	brain
19	chr10:49786400-49787600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:49786400-49787600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr10:49786400-49787600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr10:49786400-49787800	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr10:49786400-49788200	Genic enhancers	Osteobl	bone
24	chr10:49786600-49787600	Weak transcription	Brain Hippocampus Middle	brain
25	chr10:49786600-49788200	Weak transcription	Adipose Nuclei	Adipose
26	chr10:49787000-49787600	Genic enhancers	NH-A	brain
27	chr10:49787000-49787800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr10:49787000-49788400	Enhancers	NHDF-Ad	bronchial
29	chr10:49787000-49788800	Genic enhancers	Muscle Satellite Cultured Cells	--
30	chr10:49787000-49791800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr10:49787200-49787800	Enhancers	H1 Cell Line	embryonic stem cell
32	chr10:49787200-49788000	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:49787200-49788600	Enhancers	HMEC	breast
34	chr10:49787400-49787600	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr10:49787400-49787600	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr10:49787400-49787600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:49787400-49787600	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr10:49787400-49787600	Flanking Active TSS	Stomach Smooth Muscle	stomach
39	chr10:49787400-49787600	Flanking Active TSS	HSMM	muscle
40	chr10:49787400-49787800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr10:49787400-49787800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr10:49787400-49787800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:49787400-49787800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:49787400-49787800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr10:49787400-49787800	Enhancers	Fetal Muscle Leg	muscle
46	chr10:49787400-49787800	Enhancers	Fetal Thymus	thymus
47	chr10:49787400-49787800	Enhancers	Spleen	Spleen
48	chr10:49787400-49787800	Flanking Active TSS	HSMMtube	muscle
49	chr10:49787400-49788000	Weak transcription	Brain Cingulate Gyrus	brain
50	chr10:49787400-49788000	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links