Variant report

Variant	rs11101553
Chromosome Location	chr10:50100039-50100040
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50099890..50101480-chr10:50101582..50103929,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12252129	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12254094	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12255845	0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50072800-50126200	Strong transcription	Primary B cells from peripheral blood	blood
2	chr10:50074200-50107000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr10:50074600-50129600	Strong transcription	Primary B cells from cord blood	blood
4	chr10:50075400-50126000	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr10:50088000-50109400	Weak transcription	Right Atrium	heart
6	chr10:50092600-50106800	Weak transcription	Primary T cells from cord blood	blood
7	chr10:50096600-50103600	Strong transcription	GM12878-XiMat	blood
8	chr10:50096600-50106200	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr10:50096600-50107800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr10:50097400-50100400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:50098000-50105400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:50098000-50110000	Strong transcription	Primary hematopoietic stem cells	blood
13	chr10:50098200-50110200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:50099000-50100600	Enhancers	Fetal Lung	lung
15	chr10:50099000-50102600	Weak transcription	Lung	lung
16	chr10:50099400-50100400	Enhancers	HSMMtube	muscle
17	chr10:50099400-50102600	Weak transcription	Spleen	Spleen
18	chr10:50099600-50108400	Weak transcription	Adipose Nuclei	Adipose
19	chr10:50099800-50100200	Enhancers	Fetal Brain Male	brain
20	chr10:50099800-50100200	Enhancers	Fetal Brain Female	brain

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