Variant report

Variant	rs11101568
Chromosome Location	chr10:50131540-50131541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10735227	0.84[EUR][1000 genomes]
rs10745285	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10745287	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10745288	0.84[EUR][1000 genomes]
rs10745289	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10776655	0.84[EUR][1000 genomes]
rs10776656	0.84[EUR][1000 genomes]
rs10776657	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2377632	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2377649	0.84[EUR][1000 genomes]
rs2458674	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2663058	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2671698	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2671699	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2671700	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2671701	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2889691	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2940718	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2943248	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3849151	0.84[EUR][1000 genomes]
rs3849152	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4838432	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7094724	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv517287	chr10:50122181-50134266	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50121000-50134800	Weak transcription	Spleen	Spleen
2	chr10:50121000-50155800	Weak transcription	Primary T cells from cord blood	blood
3	chr10:50124800-50131800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr10:50124800-50134400	Weak transcription	GM12878-XiMat	blood
5	chr10:50125400-50154400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr10:50126000-50133000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr10:50126000-50133400	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr10:50127800-50147000	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr10:50127800-50150400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:50127800-50150600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:50128200-50133800	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr10:50130200-50143000	Strong transcription	Primary B cells from peripheral blood	blood
13	chr10:50130800-50143600	Strong transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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