Variant report

Variant	rs1110175
Chromosome Location	chr18:28592072-28592073
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1313593	0.84[CEU][hapmap];0.82[MEX][hapmap]
rs1313594	0.84[CEU][hapmap]
rs1313596	0.80[EUR][1000 genomes]
rs1313693	0.86[CEU][hapmap]
rs1617054	0.80[EUR][1000 genomes]
rs166724	0.84[CEU][hapmap]
rs169347	0.84[CEU][hapmap];0.82[MEX][hapmap]
rs202439	0.84[CEU][hapmap];0.82[MEX][hapmap]
rs276911	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs276912	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs276913	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs276914	0.80[EUR][1000 genomes]
rs276915	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs276916	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs276917	0.80[EUR][1000 genomes]
rs276920	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs276922	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs276923	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs276940	0.84[CEU][hapmap]
rs276942	0.88[CEU][hapmap];0.82[MEX][hapmap]
rs276944	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833613	chr18:28446454-28623599	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv3388313	chr18:28583296-28693160	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28566200-28600600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:28585800-28600600	Weak transcription	Esophagus	oesophagus
3	chr18:28588600-28595400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr18:28590600-28592400	Enhancers	HMEC	breast
5	chr18:28590800-28592200	Enhancers	Stomach Mucosa	stomach
6	chr18:28591200-28592400	Enhancers	NHEK	skin
7	chr18:28591400-28592200	Enhancers	A549	lung
8	chr18:28591400-28592400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr18:28591400-28593600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr18:28591600-28594000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr18:28591600-28595800	Weak transcription	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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