Variant report

Variant	rs1110258
Chromosome Location	chr4:15742716-15742717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:31)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:31 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr4:15742274-15742804	HepG2	liver:	n/a	n/a
2	MBD4	chr4:15742352-15742835	HepG2	liver:	n/a	n/a
3	NR2F2	chr4:15742312-15742884	HepG2	liver:	n/a	n/a
4	EP300	chr4:15742301-15742847	HepG2	liver:	n/a	n/a
5	CHD2	chr4:15742489-15742784	HepG2	liver:	n/a	n/a
6	FOXA1	chr4:15742307-15742965	HepG2	liver:	n/a	n/a
7	FOXA1	chr4:15742442-15742817	T-47D	breast:	n/a	n/a
8	HDAC2	chr4:15742394-15742751	HepG2	liver:	n/a	n/a
9	NFIC	chr4:15742397-15742887	HepG2	liver:	n/a	n/a
10	FOXA1	chr4:15742322-15742921	HepG2	liver:	n/a	n/a
11	RXRA	chr4:15742357-15742754	HepG2	liver:	n/a	n/a
12	EP300	chr4:15742440-15742775	HepG2	liver:	n/a	n/a
13	FOXA2	chr4:15742377-15742935	HepG2	liver:	n/a	n/a
14	FOXA1	chr4:15742490-15742813	T-47D	breast:	n/a	n/a
15	EP300	chr4:15742393-15742826	HepG2	liver:	n/a	n/a
16	CEBPB	chr4:15742330-15742894	HepG2	liver:	n/a	n/a
17	BHLHE40	chr4:15742381-15742822	HepG2	liver:	n/a	n/a
18	MXI1	chr4:15742453-15742948	HepG2	liver:	n/a	n/a
19	CEBPB	chr4:15742356-15742996	HepG2	liver:	n/a	n/a
20	MYBL2	chr4:15742367-15742820	HepG2	liver:	n/a	n/a
21	FOXA1	chr4:15742332-15743021	HepG2	liver:	n/a	n/a
22	MAFF	chr4:15742433-15742783	HepG2	liver:	n/a	n/a
23	CEBPB	chr4:15742300-15742776	HepG2	liver:	n/a	n/a
24	FOXA1	chr4:15742409-15742913	HepG2	liver:	n/a	n/a
25	SIN3AK20	chr4:15742433-15743009	MCF-7	breast:	n/a	n/a
26	RFX5	chr4:15742507-15742816	HepG2	liver:	n/a	n/a
27	SMC3	chr4:15742382-15742917	HepG2	liver:	n/a	n/a
28	JUND	chr4:15742407-15742785	HepG2	liver:	n/a	n/a
29	ARID3A	chr4:15742386-15742969	HepG2	liver:	n/a	n/a
30	HNF4A	chr4:15742455-15742778	HepG2	liver:	n/a	n/a
31	RCOR1	chr4:15742477-15742808	HepG2	liver:	n/a	n/a

No data

Variant related genes	Relation type
ENSG00000248188	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4279203	0.81[JPT][hapmap]
rs62290623	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1110258	FAM184B	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15707400-15742800	Weak transcription	Primary B cells from cord blood	blood
2	chr4:15723000-15743000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr4:15723000-15744600	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr4:15729000-15743200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr4:15733600-15742800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr4:15735400-15742800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr4:15741400-15743600	Enhancers	Liver	Liver
8	chr4:15741800-15743200	Enhancers	HepG2	liver
9	chr4:15742200-15748000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr4:15742600-15742800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:15742600-15743000	Flanking Active TSS	Dnd41	blood

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