Variant report

Variant	rs11102692
Chromosome Location	chr1:114423205-114423206
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:114422775..114425297-chr1:114447474..114449875,3	K562	blood:
2	chr1:114422394..114424158-chr1:114443747..114445453,2	MCF-7	breast:
3	chr1:114415189..114417454-chr1:114422016..114424443,3	MCF-7	breast:
4	chr1:114422767..114425091-chr1:114429070..114430741,2	MCF-7	breast:
5	chr1:114423024..114425877-chr1:114445566..114448477,2	MCF-7	breast:
6	chr1:114420803..114423426-chr1:114446345..114447908,2	MCF-7	breast:
7	chr1:114330552..114332424-chr1:114422086..114424136,2	K562	blood:
8	chr1:114422775..114424966-chr1:114437779..114439803,2	K562	blood:
9	chr1:114422800..114426038-chr1:114435058..114437356,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BCL2L15-1	chr1:114420790-114424619	NONHSAT005342

No data

Variant related genes	Relation type
ENSG00000134262	Chromatin interaction
ENSG00000118655	Chromatin interaction
ENSG00000188761	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11102693	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	esv1826178	chr1:114331645-114471583	Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	esv1842398	chr1:114331645-114471583	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
4	esv1848035	chr1:114331645-114471583	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114415000-114447000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:114415400-114428800	Weak transcription	Colonic Mucosa	Colon
3	chr1:114415400-114437000	Weak transcription	Thymus	Thymus
4	chr1:114417000-114423600	Weak transcription	Stomach Mucosa	stomach
5	chr1:114417200-114437000	Weak transcription	Primary B cells from cord blood	blood
6	chr1:114417600-114423600	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr1:114417600-114428800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr1:114419000-114427800	Weak transcription	Pancreas	Pancrea
9	chr1:114420200-114437800	Weak transcription	Brain Hippocampus Middle	brain
10	chr1:114420200-114446400	Weak transcription	Aorta	Aorta
11	chr1:114421000-114423400	Enhancers	Primary T cells fromperipheralblood	blood
12	chr1:114421000-114423600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr1:114421000-114423600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr1:114421000-114424200	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr1:114421000-114424600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr1:114421000-114424600	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr1:114421000-114424800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr1:114421200-114424400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr1:114421600-114424000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr1:114421600-114424600	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr1:114421600-114424600	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr1:114421800-114424800	Enhancers	Dnd41	blood
23	chr1:114421800-114429600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr1:114422000-114424000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr1:114422200-114423400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr1:114422200-114423800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr1:114422400-114423400	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr1:114422400-114423800	Weak transcription	Primary hematopoietic stem cells	blood
29	chr1:114422400-114424000	Weak transcription	Fetal Intestine Large	intestine
30	chr1:114422400-114429000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr1:114422600-114424000	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr1:114422600-114424200	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr1:114422600-114424200	Flanking Active TSS	GM12878-XiMat	blood
34	chr1:114422800-114423800	Weak transcription	Small Intestine	intestine
35	chr1:114422800-114424200	Weak transcription	Fetal Intestine Small	intestine
36	chr1:114422800-114429000	Weak transcription	Fetal Stomach	stomach
37	chr1:114423000-114423400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr1:114423000-114423400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr1:114423000-114428000	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr1:114423200-114423800	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr1:114423200-114424000	Enhancers	Monocytes-CD14+_RO01746	blood
42	chr1:114423200-114424200	Enhancers	Primary T cells from cord blood	blood
43	chr1:114423200-114424200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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