Variant report

Variant	rs11102701
Chromosome Location	chr1:114449829-114449830
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:114352137..114357235-chr1:114445065..114452395,18	MCF-7	breast:
2	chr1:114444168..114452207-chr1:114466193..114476714,61	K562	blood:
3	chr1:114449032..114451471-chr13:20531152..20533665,2	MCF-7	breast:
4	chr1:114352306..114358140-chr1:114445806..114450844,18	MCF-7	breast:
5	chr1:114449671..114451992-chr1:114516698..114518911,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231128	Chromatin interaction
ENSG00000163349	Chromatin interaction
ENSG00000235527	Chromatin interaction
ENSG00000081019	Chromatin interaction
ENSG00000121741	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10745340	0.81[AFR][1000 genomes]
rs10776775	0.81[AFR][1000 genomes]
rs10858022	0.81[AFR][1000 genomes]
rs10858023	0.81[AFR][1000 genomes]
rs11102702	0.84[EUR][1000 genomes]
rs11552449	0.91[EUR][1000 genomes]
rs1217392	0.81[AFR][1000 genomes]
rs2358994	0.88[EUR][1000 genomes]
rs2358995	0.88[EUR][1000 genomes]
rs3761936	0.90[EUR][1000 genomes]
rs3789613	0.81[AFR][1000 genomes]
rs6661817	0.81[AFR][1000 genomes]
rs7513707	0.91[EUR][1000 genomes]
rs7523862	0.81[AFR][1000 genomes]
rs7524200	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	esv1826178	chr1:114331645-114471583	Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	esv1842398	chr1:114331645-114471583	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
4	esv1848035	chr1:114331645-114471583	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
5	esv3398169	chr1:114449767-114450134	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114448600-114450000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:114448600-114450200	Weak transcription	Brain Angular Gyrus	brain
3	chr1:114448600-114450400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:114448600-114450400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr1:114448600-114450600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr1:114448600-114450600	Weak transcription	Esophagus	oesophagus
7	chr1:114448600-114450600	Weak transcription	HSMMtube	muscle
8	chr1:114448600-114451000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:114448600-114452800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr1:114448600-114452800	Weak transcription	Brain Substantia Nigra	brain
11	chr1:114448600-114453200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:114448600-114453200	Weak transcription	Gastric	stomach
13	chr1:114448600-114453600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr1:114448600-114453600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr1:114448600-114453800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr1:114448600-114453800	Weak transcription	Aorta	Aorta
17	chr1:114448600-114453800	Weak transcription	Pancreas	Pancrea
18	chr1:114448600-114453800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr1:114448600-114454200	Weak transcription	Small Intestine	intestine
20	chr1:114448600-114455000	Weak transcription	Fetal Heart	heart
21	chr1:114448600-114455200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr1:114448600-114455200	Weak transcription	Psoas Muscle	Psoas
23	chr1:114448600-114455400	Weak transcription	Right Ventricle	heart
24	chr1:114448600-114456000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr1:114448600-114456600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr1:114448600-114461400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr1:114448800-114450200	Weak transcription	Osteobl	bone
28	chr1:114448800-114450400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr1:114448800-114450400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr1:114448800-114450400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr1:114448800-114450800	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr1:114448800-114450800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr1:114448800-114451200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr1:114448800-114451400	Weak transcription	NHDF-Ad	bronchial
35	chr1:114448800-114453400	Weak transcription	Primary B cells from cord blood	blood
36	chr1:114448800-114453800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr1:114448800-114454400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr1:114448800-114456000	Weak transcription	Fetal Kidney	kidney
39	chr1:114449000-114450000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr1:114449000-114450400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr1:114449000-114450400	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr1:114449000-114450400	Weak transcription	Fetal Lung	lung
43	chr1:114449000-114450400	Weak transcription	Stomach Smooth Muscle	stomach
44	chr1:114449000-114450600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr1:114449000-114450600	Weak transcription	Left Ventricle	heart
46	chr1:114449000-114450600	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr1:114449000-114450600	Weak transcription	NHLF	lung
48	chr1:114449000-114451200	Weak transcription	Rectal Smooth Muscle	rectum
49	chr1:114449000-114453800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr1:114449000-114453800	Weak transcription	Colonic Mucosa	Colon

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