Variant report

Variant	rs11111834
Chromosome Location	chr12:104304894-104304895
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10861142	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861143	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861146	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11111831	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11111845	0.86[AFR][1000 genomes]
rs12369947	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2033729	0.83[AMR][1000 genomes]
rs7964281	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7971563	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9308316	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9989004	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560039	chr12:104177668-104455340	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104302800-104306000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr12:104303000-104305600	Weak transcription	Fetal Muscle Leg	muscle
3	chr12:104304000-104306000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:104304200-104305800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr12:104304200-104309200	Weak transcription	HSMM	muscle
6	chr12:104304400-104305600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr12:104304400-104309000	Weak transcription	HSMMtube	muscle
8	chr12:104304600-104305800	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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