Variant report

Variant	rs11112087
Chromosome Location	chr12:104915204-104915205
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:104909053..104911961-chr12:104913731..104916040,2	MCF-7	breast:
2	chr12:104913735..104915662-chr12:104916731..104918448,2	K562	blood:
3	chr12:104907056..104912149-chr12:104913273..104918297,6	K562	blood:
4	chr12:104909660..104911855-chr12:104915030..104918297,3	K562	blood:
5	chr12:104908202..104911501-chr12:104915065..104918852,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258111	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11112082	0.86[EUR][1000 genomes]
rs12300525	0.86[EUR][1000 genomes]
rs12307816	0.86[EUR][1000 genomes]
rs73384116	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832504	chr12:104853331-105028245	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104901200-104919200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:104901800-104920400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:104902000-104915600	Weak transcription	Fetal Brain Male	brain
4	chr12:104904400-104916800	Weak transcription	A549	lung
5	chr12:104904400-104917600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr12:104905200-104916200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr12:104905200-104916600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr12:104905800-104916800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr12:104906800-104917600	Weak transcription	HSMM	muscle
10	chr12:104907400-104917000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr12:104907600-104917000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr12:104908600-104920600	Weak transcription	Right Ventricle	heart
13	chr12:104909400-104919200	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr12:104909400-104919400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr12:104909800-104919400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr12:104910000-104917000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr12:104910400-104918200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr12:104911000-104921800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr12:104911200-104915600	Enhancers	Brain Germinal Matrix	brain
20	chr12:104911400-104918600	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr12:104911600-104915600	Enhancers	Primary T cells fromperipheralblood	blood
22	chr12:104911800-104916200	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr12:104912000-104919200	Enhancers	Primary B cells from peripheral blood	blood
24	chr12:104912400-104918400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr12:104912800-104915600	Enhancers	Small Intestine	intestine
26	chr12:104912800-104919200	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr12:104913000-104915400	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr12:104913000-104915600	Genic enhancers	Dnd41	blood
29	chr12:104913200-104915600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr12:104913200-104915600	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr12:104913200-104915600	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr12:104913200-104915600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr12:104913200-104915800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr12:104913200-104917800	Enhancers	Right Atrium	heart
35	chr12:104913200-104918600	Enhancers	Placenta	Placenta
36	chr12:104913400-104915800	Enhancers	Gastric	stomach
37	chr12:104913400-104918600	Enhancers	Spleen	Spleen
38	chr12:104913600-104919600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr12:104913800-104916800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr12:104913800-104916800	Weak transcription	Brain Angular Gyrus	brain
41	chr12:104913800-104917200	Weak transcription	Brain Hippocampus Middle	brain
42	chr12:104914000-104915400	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr12:104914000-104916200	Weak transcription	Fetal Thymus	thymus
44	chr12:104914000-104916800	Weak transcription	Colon Smooth Muscle	Colon
45	chr12:104914000-104917000	Weak transcription	Ovary	ovary
46	chr12:104914000-104917200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr12:104914000-104917200	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr12:104914000-104918600	Enhancers	Primary hematopoietic stem cells	blood
49	chr12:104914000-104921200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr12:104914200-104915600	Weak transcription	Fetal Brain Female	brain

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