Variant report

Variant	rs11112089
Chromosome Location	chr12:104919619-104919620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:104919275..104922640-chr12:104923988..104926677,3	K562	blood:
2	chr12:104919574..104922787-chr12:104926132..104929881,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12319682	1.00[TSI][hapmap]
rs12321261	1.00[TSI][hapmap]
rs12321380	1.00[TSI][hapmap]
rs17035643	1.00[TSI][hapmap]
rs17035740	1.00[TSI][hapmap]
rs17035786	1.00[TSI][hapmap]
rs7315246	1.00[GIH][hapmap]
rs7342363	1.00[TSI][hapmap]
rs7957854	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832504	chr12:104853331-105028245	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104901800-104920400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:104908600-104920600	Weak transcription	Right Ventricle	heart
3	chr12:104911000-104921800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr12:104914000-104921200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr12:104914600-104920400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr12:104914800-104920200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr12:104915200-104919800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr12:104915400-104920200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr12:104915600-104920000	Weak transcription	Brain Germinal Matrix	brain
10	chr12:104915600-104936600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr12:104915800-104920200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr12:104916600-104923000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr12:104916800-104920600	Enhancers	Colon Smooth Muscle	Colon
14	chr12:104917200-104925800	Weak transcription	Lung	lung
15	chr12:104917600-104921200	Enhancers	K562	blood
16	chr12:104917600-104924600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr12:104917800-104921000	Weak transcription	Right Atrium	heart
18	chr12:104917800-104922600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr12:104917800-104922600	Weak transcription	NHEK	skin
20	chr12:104917800-104922800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr12:104917800-104928200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr12:104918000-104934200	Weak transcription	A549	lung
23	chr12:104918200-104920000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr12:104918200-104920200	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr12:104918200-104920200	Weak transcription	Fetal Thymus	thymus
26	chr12:104918200-104921400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr12:104918200-104928200	Weak transcription	Osteobl	bone
28	chr12:104918200-104928400	Weak transcription	Ovary	ovary
29	chr12:104918400-104920400	Weak transcription	Fetal Brain Female	brain
30	chr12:104918400-104920600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr12:104918400-104920800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr12:104918400-104921200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr12:104918400-104921200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr12:104918400-104927400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr12:104918400-104928200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr12:104918600-104919800	Weak transcription	Fetal Muscle Leg	muscle
37	chr12:104918600-104920000	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr12:104918600-104920200	Weak transcription	Placenta	Placenta
39	chr12:104918600-104920600	Weak transcription	Left Ventricle	heart
40	chr12:104918600-104920600	Weak transcription	Pancreas	Pancrea
41	chr12:104918600-104920800	Weak transcription	Dnd41	blood
42	chr12:104918600-104921000	Weak transcription	Gastric	stomach
43	chr12:104918600-104925400	Weak transcription	Spleen	Spleen
44	chr12:104918600-104926600	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr12:104918600-104926800	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr12:104918600-104927600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr12:104918800-104920200	Weak transcription	Stomach Smooth Muscle	stomach
48	chr12:104918800-104921000	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr12:104918800-104921000	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr12:104918800-104921200	Enhancers	HUES48 Cell Line	embryonic stem cell

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