Variant report

Variant	rs11112209
Chromosome Location	chr12:105237362-105237363
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11112203	0.88[YRI][hapmap]
rs11112212	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12296494	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12298260	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12314394	1.00[AFR][1000 genomes]
rs12321362	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12321429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7358753	1.00[AFR][1000 genomes]
rs7962610	0.88[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv899497	chr12:105155291-105247010	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv899498	chr12:105173598-105461620	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105211000-105237600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr12:105219800-105240800	Weak transcription	Gastric	stomach
3	chr12:105220400-105239600	Weak transcription	Aorta	Aorta
4	chr12:105220800-105260600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr12:105222000-105258400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr12:105222000-105258600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr12:105222200-105258800	Weak transcription	Pancreas	Pancrea
8	chr12:105227400-105237600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr12:105229000-105259200	Weak transcription	Placenta	Placenta
10	chr12:105233200-105258600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr12:105235400-105237600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr12:105236000-105240800	Strong transcription	Liver	Liver
13	chr12:105236200-105258600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr12:105236400-105239000	Weak transcription	Adipose Nuclei	Adipose
15	chr12:105236600-105239400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr12:105237000-105238400	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr12:105237000-105239400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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