Variant report

Variant	rs11112210
Chromosome Location	chr12:105238892-105238893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10507183	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10861278	0.88[EUR][1000 genomes]
rs10861280	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10861281	0.86[EUR][1000 genomes]
rs11112207	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112208	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1494099	0.85[EUR][1000 genomes]
rs2029736	0.87[EUR][1000 genomes]
rs2047125	0.86[EUR][1000 genomes]
rs2047126	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2047127	0.85[EUR][1000 genomes]
rs2220813	0.86[EUR][1000 genomes]
rs2453163	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2453164	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2453169	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2453171	0.85[EUR][1000 genomes]
rs2468096	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2468097	0.85[EUR][1000 genomes]
rs2468098	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2468102	0.86[EUR][1000 genomes]
rs2468103	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2468104	0.86[EUR][1000 genomes]
rs2468106	0.86[EUR][1000 genomes]
rs2468107	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2468108	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2468339	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2468341	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2468343	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2468344	0.86[EUR][1000 genomes]
rs2468345	0.86[EUR][1000 genomes]
rs2468396	0.85[ASN][1000 genomes]
rs2642119	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2642120	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2642121	0.86[EUR][1000 genomes]
rs2730294	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2731031	0.85[EUR][1000 genomes]
rs6539169	0.87[EUR][1000 genomes]
rs7971260	0.90[EUR][1000 genomes]
rs7971392	0.91[EUR][1000 genomes]
rs7976567	0.87[EUR][1000 genomes]
rs969629	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv899497	chr12:105155291-105247010	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv899498	chr12:105173598-105461620	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105219800-105240800	Weak transcription	Gastric	stomach
2	chr12:105220400-105239600	Weak transcription	Aorta	Aorta
3	chr12:105220800-105260600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr12:105222000-105258400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr12:105222000-105258600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:105222200-105258800	Weak transcription	Pancreas	Pancrea
7	chr12:105229000-105259200	Weak transcription	Placenta	Placenta
8	chr12:105233200-105258600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr12:105236000-105240800	Strong transcription	Liver	Liver
10	chr12:105236200-105258600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr12:105236400-105239000	Weak transcription	Adipose Nuclei	Adipose
12	chr12:105236600-105239400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr12:105237000-105239400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr12:105237400-105259000	Weak transcription	A549	lung
15	chr12:105238000-105240000	Weak transcription	GM12878-XiMat	blood
16	chr12:105238400-105239400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr12:105238400-105257000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr12:105238400-105260400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr12:105238400-105280000	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links