Variant report

Variant	rs11112275
Chromosome Location	chr12:105371678-105371679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11112255	0.82[EUR][1000 genomes]
rs11112262	0.84[EUR][1000 genomes]
rs11112267	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11112272	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11112273	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11112274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112278	0.95[EUR][1000 genomes]
rs11112280	0.93[EUR][1000 genomes]
rs11112281	0.93[EUR][1000 genomes]
rs11112282	0.93[EUR][1000 genomes]
rs11112288	0.93[EUR][1000 genomes]
rs11112289	0.93[EUR][1000 genomes]
rs11112290	0.95[EUR][1000 genomes]
rs11112298	0.95[EUR][1000 genomes]
rs11112300	0.93[EUR][1000 genomes]
rs11112301	0.93[EUR][1000 genomes]
rs11112302	0.93[EUR][1000 genomes]
rs11112304	0.95[EUR][1000 genomes]
rs11112305	0.93[EUR][1000 genomes]
rs11112312	0.87[EUR][1000 genomes]
rs11112317	0.87[EUR][1000 genomes]
rs11519610	0.93[EUR][1000 genomes]
rs11519721	0.93[EUR][1000 genomes]
rs12372030	0.87[EUR][1000 genomes]
rs16891	0.88[EUR][1000 genomes]
rs56741182	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv899498	chr12:105173598-105461620	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
3	nsv832505	chr12:105315352-105497765	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv869	chr12:105363425-105394904	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
5	nsv983361	chr12:105367672-105376203	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3436359	chr12:105367822-105372020	Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv3498330	chr12:105368622-105373520	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv511501	chr12:105368694-105374137	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv8886	chr12:105368815-105373770	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	esv3498352	chr12:105368932-105373639	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv3498363	chr12:105368974-105373613	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	esv3498341	chr12:105368976-105373617	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv512291	chr12:105368996-105375344	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv498805	chr12:105369052-105373550	Enhancers Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	esv3498374	chr12:105369053-105373550	Enhancers Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	esv13533	chr12:105369442-105373398	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
17	esv3500896	chr12:105370222-105374820	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	esv3500907	chr12:105370222-105374820	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105368000-105371800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr12:105368000-105371800	Enhancers	Primary B cells from peripheral blood	blood
3	chr12:105368200-105372000	Enhancers	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links