Variant report

Variant	rs11112772
Chromosome Location	chr12:106255141-106255142
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106254674..106256372-chr12:106314375..106316199,2	MCF-7	breast:
2	chr12:106167922..106169528-chr12:106254907..106257497,2	MCF-7	breast:
3	chr12:106252576..106257330-chr12:106324880..106330173,10	MCF-7	breast:
4	chr12:106254601..106257221-chr12:106327502..106331363,4	MCF-7	breast:
5	chr12:106252439..106256460-chr12:106528954..106534113,10	MCF-7	breast:
6	chr12:106248554..106253147-chr12:106253796..106257710,5	MCF-7	breast:
7	chr12:106253022..106256354-chr12:106530460..106534147,5	MCF-7	breast:
8	chr12:105837444..105839027-chr12:106252891..106255471,2	MCF-7	breast:
9	chr12:106253691..106256253-chr12:106286526..106288300,2	MCF-7	breast:
10	chr12:106233406..106235430-chr12:106254308..106256994,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12317854	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106249400-106256800	Weak transcription	HSMMtube	muscle
2	chr12:106254600-106255200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr12:106254600-106255200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr12:106254600-106255200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr12:106254600-106255200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr12:106254600-106255400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:106254800-106255400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr12:106254800-106255800	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr12:106255000-106255200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:106255000-106255200	Enhancers	Left Ventricle	heart
11	chr12:106255000-106255400	Enhancers	H9 Cell Line	embryonic stem cell
12	chr12:106255000-106255400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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