Variant report

Variant	rs11112872
Chromosome Location	chr12:106505334-106505335
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:106499591..106503536-chr12:106504416..106508585,6	MCF-7	breast:
2	chr12:106504477..106507243-chr12:106513286..106514940,2	MCF-7	breast:
3	chr12:106476871..106479855-chr12:106504214..106506974,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000074590	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10861556	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11112856	1.00[YRI][hapmap]
rs11112867	0.88[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs11112869	0.83[ASN][1000 genomes]
rs1427785	0.84[CHB][hapmap]
rs1427786	0.85[CHB][hapmap]
rs1560000	0.89[CHB][hapmap]
rs2059769	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2436597	0.85[CHB][hapmap]
rs2468200	0.84[ASN][1000 genomes]
rs3782691	0.88[ASN][1000 genomes]
rs967872	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832509	chr12:106363888-106516221	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106493400-106512400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr12:106495600-106507200	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr12:106498400-106507200	Weak transcription	Pancreas	Pancrea
4	chr12:106499400-106505400	Enhancers	Fetal Intestine Small	intestine
5	chr12:106499600-106511400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr12:106499800-106507800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:106499800-106508400	Genic enhancers	HSMM	muscle
8	chr12:106500000-106506200	Enhancers	NHEK	skin
9	chr12:106500000-106507000	Enhancers	Adipose Nuclei	Adipose
10	chr12:106500000-106507400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr12:106500000-106510000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr12:106500200-106507400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr12:106500200-106510200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr12:106500200-106514000	Enhancers	Liver	Liver
15	chr12:106500400-106505400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr12:106500400-106505800	Enhancers	Brain Substantia Nigra	brain
17	chr12:106500600-106507400	Enhancers	HepG2	liver
18	chr12:106500600-106508600	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr12:106500600-106508600	Enhancers	Right Atrium	heart
20	chr12:106500800-106506200	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr12:106500800-106507600	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr12:106500800-106510200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr12:106500800-106521800	Enhancers	Brain Angular Gyrus	brain
24	chr12:106501200-106516800	Enhancers	Right Ventricle	heart
25	chr12:106501400-106510400	Enhancers	Fetal Brain Female	brain
26	chr12:106502000-106507400	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr12:106502200-106507000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr12:106502400-106506000	Weak transcription	Esophagus	oesophagus
29	chr12:106502400-106506000	Weak transcription	NHLF	lung
30	chr12:106502400-106507000	Enhancers	Stomach Smooth Muscle	stomach
31	chr12:106502400-106510000	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr12:106502600-106505800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr12:106502600-106505800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr12:106502600-106506000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr12:106502600-106509400	Weak transcription	Gastric	stomach
36	chr12:106502800-106506000	Weak transcription	Fetal Stomach	stomach
37	chr12:106502800-106506000	Weak transcription	NHDF-Ad	bronchial
38	chr12:106502800-106506200	Weak transcription	Colon Smooth Muscle	Colon
39	chr12:106502800-106506400	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr12:106502800-106507600	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr12:106502800-106507600	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr12:106503000-106505800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr12:106503000-106506000	Weak transcription	Ovary	ovary
44	chr12:106503000-106506400	Enhancers	Fetal Heart	heart
45	chr12:106503000-106506400	Weak transcription	Stomach Mucosa	stomach
46	chr12:106503000-106507000	Weak transcription	Fetal Kidney	kidney
47	chr12:106503200-106505400	Genic enhancers	HSMMtube	muscle
48	chr12:106503200-106505800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr12:106503200-106505800	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr12:106503200-106505800	Weak transcription	Placenta	Placenta

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