Variant report

Variant	rs1111328
Chromosome Location	chr11:121560350-121560351
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs57157790	1.00[AMR][1000 genomes]
rs58028774	1.00[AMR][1000 genomes]
rs58482024	1.00[AMR][1000 genomes]
rs60352508	1.00[AMR][1000 genomes]
rs73597357	1.00[AMR][1000 genomes]
rs73597361	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121558200-121560400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr11:121558400-121560400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr11:121558400-121560600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr11:121558400-121560800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:121558400-121560800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr11:121558600-121560400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:121558600-121560400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr11:121558600-121560400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr11:121558600-121560400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:121558600-121560400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:121558600-121560600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr11:121558600-121561000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:121558800-121560400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr11:121559000-121560400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:121559000-121561000	Enhancers	HepG2	liver
16	chr11:121559000-121566600	Weak transcription	Pancreas	Pancrea
17	chr11:121559200-121560400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:121559200-121567000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:121559400-121560400	Enhancers	HSMM	muscle
20	chr11:121559400-121562600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:121559400-121563000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:121559400-121565800	Weak transcription	Fetal Heart	heart
23	chr11:121559800-121560400	Enhancers	HSMMtube	muscle
24	chr11:121559800-121566800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:121560000-121560400	Enhancers	NH-A	brain
26	chr11:121560000-121561000	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr11:121560000-121563000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr11:121560200-121560400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:121560200-121560400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:121560200-121560400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:121560200-121562800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr11:121560200-121562800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:121560200-121562800	Weak transcription	Osteobl	bone
34	chr11:121560200-121566800	Weak transcription	Fetal Muscle Trunk	muscle

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