Variant report

Variant	rs11115369
Chromosome Location	chr12:83129812-83129813
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10735458	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs11115373	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs12229521	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs12313503	0.80[CHB][hapmap]
rs17009859	0.80[CHB][hapmap]
rs17009863	0.80[CHB][hapmap]
rs4882521	0.80[CHB][hapmap]
rs7303441	0.80[CHB][hapmap]
rs7306509	0.86[JPT][hapmap]
rs7315791	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053093	chr12:82645292-83287809	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv541551	chr12:82645292-83287809	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv899348	chr12:82744187-83169297	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv427917	chr12:82917031-83279712	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv521849	chr12:83013783-83991479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv469490	chr12:83089431-83507269	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv559542	chr12:83089431-83507269	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	esv2758315	chr12:83101045-83357621	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv2759911	chr12:83101045-83357621	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv2755991	chr12:83105631-83248605	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv469491	chr12:83108395-83203742	Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv559543	chr12:83108395-83203742	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv2754173	chr12:83125000-83245838	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:83102400-83138800	Weak transcription	Fetal Kidney	kidney
2	chr12:83102600-83140600	Weak transcription	Pancreas	Pancrea
3	chr12:83102800-83134000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr12:83106800-83133800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr12:83113000-83138600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr12:83115200-83138200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr12:83115400-83138800	Weak transcription	Brain Anterior Caudate	brain
8	chr12:83115800-83138000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr12:83119800-83134200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr12:83120200-83133000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr12:83122000-83138600	Weak transcription	Brain Hippocampus Middle	brain
12	chr12:83122000-83149000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr12:83122800-83140200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr12:83122800-83143600	Weak transcription	Lung	lung
15	chr12:83123000-83134600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr12:83123000-83138000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr12:83123000-83140400	Weak transcription	Gastric	stomach
18	chr12:83123000-83140600	Weak transcription	Esophagus	oesophagus
19	chr12:83124000-83134400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr12:83124200-83134200	Weak transcription	Fetal Stomach	stomach
21	chr12:83124600-83131600	Weak transcription	Fetal Lung	lung
22	chr12:83125200-83130400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr12:83125200-83138800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr12:83125600-83137600	Weak transcription	Brain Substantia Nigra	brain
25	chr12:83125800-83133600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr12:83126800-83133000	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr12:83127000-83130000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr12:83128600-83134000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr12:83128600-83134400	Weak transcription	Fetal Muscle Leg	muscle
30	chr12:83128600-83134800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr12:83128600-83137000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr12:83129600-83131800	Enhancers	HUVEC	blood vessel
33	chr12:83129800-83130000	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr12:83129800-83130000	Enhancers	NH-A	brain
35	chr12:83129800-83131600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr12:83129800-83132400	Enhancers	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links