Variant report

Variant	rs11115915
Chromosome Location	chr12:83953652-83953653
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73350339	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521849	chr12:83013783-83991479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:83952600-83953800	Enhancers	Duodenum Smooth Muscle	Duodenum
2	chr12:83952800-83953800	Enhancers	Colon Smooth Muscle	Colon
3	chr12:83952800-83953800	Enhancers	Rectal Smooth Muscle	rectum
4	chr12:83952800-83954200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr12:83953000-83953800	Enhancers	Fetal Kidney	kidney
6	chr12:83953000-83954000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr12:83953000-83954200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:83953200-83953800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr12:83953200-83953800	Enhancers	Fetal Lung	lung
10	chr12:83953200-83954200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr12:83953400-83953800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr12:83953400-83953800	Active TSS	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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