Variant report

Variant	rs11115938
Chromosome Location	chr12:84030844-84030845
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10746293	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10779011	0.84[EUR][1000 genomes]
rs10779017	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10779022	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10779028	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10779029	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10779031	0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10779032	0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10779033	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10862692	0.81[EUR][1000 genomes]
rs10862730	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10862731	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11115912	0.82[EUR][1000 genomes]
rs11115994	0.83[AMR][1000 genomes]
rs11115995	0.92[AMR][1000 genomes]
rs11115997	0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11537511	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11537516	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1391074	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1606184	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2100768	0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2403118	0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs55696500	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56168986	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7314848	0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7956829	0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9634236	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469496	chr12:84014359-84074475	Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv559562	chr12:84014359-84074475	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv559563	chr12:84017043-84450824	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:84024800-84034000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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