Variant report

Variant	rs11116686
Chromosome Location	chr12:85408825-85408826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10160886	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs10506911	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs10506912	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs10779148	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs10862955	0.91[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs11116701	0.83[ASN][1000 genomes]
rs11116702	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs11116704	0.91[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs11116707	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs11116708	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs11116712	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs11532387	0.80[ASN][1000 genomes]
rs11609088	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs11612309	0.91[CHB][hapmap]
rs12227853	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs12227986	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs12229124	0.91[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs12229923	0.91[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs12231122	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs12301980	0.83[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs12814669	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs1389798	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs1404867	0.91[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs1404868	0.91[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs1494500	0.84[ASN][1000 genomes]
rs1525548	0.83[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs17012518	1.00[AFR][1000 genomes]
rs17012522	0.84[ASN][1000 genomes]
rs17012616	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1838671	0.84[ASN][1000 genomes]
rs1973816	0.84[ASN][1000 genomes]
rs1976270	0.91[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs2048123	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs2174754	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs2305102	0.91[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs2404772	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs2404773	0.83[CHB][hapmap]
rs3765044	0.91[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs4761074	0.90[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs4761075	0.83[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs4761077	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs4761113	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs4761114	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs4761115	0.83[ASN][1000 genomes]
rs66617212	0.84[ASN][1000 genomes]
rs7133493	0.83[ASN][1000 genomes]
rs7135053	0.91[CHB][hapmap]
rs718553	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs7302315	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs7304576	0.91[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs7312075	0.91[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs7954110	0.84[ASN][1000 genomes]
rs7956568	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs7962411	0.84[ASN][1000 genomes]
rs7965562	0.91[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs7974623	0.90[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899377	chr12:85157346-85629241	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1040452	chr12:85179586-85747907	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv1792335	chr12:85321249-86003609	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:85402400-85409800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr12:85402400-85410200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr12:85403000-85409000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr12:85408600-85418000	Enhancers	Hela-S3	cervix
5	chr12:85408800-85411000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links