Variant report

Variant	rs11117127
Chromosome Location	chr12:86346048-86346049
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10863156	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11117114	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11117130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11117143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11117166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11117168	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1797806	chr12:86198935-86425608	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv559667	chr12:86318004-86416212	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86343000-86346200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:86343200-86346600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr12:86343600-86346600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr12:86343600-86348000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr12:86343600-86348200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr12:86343800-86347000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr12:86345400-86346400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr12:86345400-86347600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr12:86345800-86347800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr12:86346000-86346600	Enhancers	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links