Variant report

Variant	rs11117650
Chromosome Location	chr1:216838734-216838735
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10779272	0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs10779273	0.89[AFR][1000 genomes]
rs11117653	0.88[AFR][1000 genomes]
rs12071221	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12755014	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17627111	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5020194	0.88[YRI][hapmap];0.86[AFR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216787400-216853800	Weak transcription	Pancreas	Pancrea
2	chr1:216814000-216856200	Weak transcription	Psoas Muscle	Psoas
3	chr1:216820400-216855400	Weak transcription	Fetal Heart	heart
4	chr1:216826000-216856200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:216834200-216844000	Weak transcription	Left Ventricle	heart
6	chr1:216834400-216860400	Weak transcription	Right Ventricle	heart
7	chr1:216835800-216839600	Weak transcription	Fetal Intestine Large	intestine
8	chr1:216836000-216839400	Weak transcription	Fetal Intestine Small	intestine
9	chr1:216836600-216839600	Weak transcription	Placenta	Placenta
10	chr1:216837600-216839800	Weak transcription	Gastric	stomach
11	chr1:216838200-216839000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:216838200-216840600	Enhancers	Hela-S3	cervix
13	chr1:216838400-216843800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr1:216838400-216850000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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