Variant report
| Variant | rs11117844 |
|---|---|
| Chromosome Location | chr1:217462561-217462562 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:217461766..217465413-chr1:217470243..217473543,3 | K562 | blood: |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-GPATCH2-3 | chr1:217462213-217463152 | NONHSAT009494 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs11117829 | 0.82[ASN][1000 genomes] |
| rs12074270 | 0.95[ASN][1000 genomes] |
| rs12096476 | 0.82[ASN][1000 genomes] |
| rs12401427 | 0.81[ASN][1000 genomes] |
| rs12406684 | 0.95[ASN][1000 genomes] |
| rs12407373 | 0.81[ASN][1000 genomes] |
| rs2014326 | 0.81[ASN][1000 genomes] |
| rs7549926 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2762164 | chr1:217389951-217742750 | Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
