Variant report

Variant	rs11118462
Chromosome Location	chr1:220108238-220108239
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220104504..220107044-chr1:220107601..220110636,3	K562	blood:
2	chr1:220099807..220102692-chr1:220105509..220108456,3	K562	blood:
3	chr1:220107728..220110258-chr1:220114108..220116181,2	K562	blood:
4	chr1:220052848..220054411-chr1:220106431..220109405,2	K562	blood:
5	chr1:220091556..220093847-chr1:220107319..220109342,2	K562	blood:
6	chr1:220106974..220109621-chr1:220112429..220115414,3	K562	blood:
7	chr1:220100898..220104283-chr1:220107241..220109368,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10863513	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs11118455	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs11118458	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11118463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12064812	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12094370	0.90[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17006822	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs1909198	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2378330	0.90[CEU][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs6694002	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs72740967	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs950455	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006393	chr1:219925261-220126458	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220105600-220113800	Weak transcription	Fetal Intestine Large	intestine
2	chr1:220107800-220108400	Enhancers	HepG2	liver
3	chr1:220108000-220108400	Enhancers	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links