Variant report

Variant	rs11118471
Chromosome Location	chr1:220132961-220132962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11118478	1.00[AMR][1000 genomes]
rs12097441	1.00[AMR][1000 genomes]
rs2011624	1.00[AMR][1000 genomes]
rs5030751	1.00[AMR][1000 genomes]
rs73084894	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7537559	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427930	chr1:220120379-220333434	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	744 gene(s)	inside rSNPs	diseases
2	nsv998124	chr1:220132739-220189211	Strong transcription Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	n/a
3	esv3347973	chr1:220132829-220135427	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region	2 gene(s)	inside rSNPs	n/a
4	esv3371730	chr1:220132854-220135702	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220129200-220145800	Weak transcription	HepG2	liver
2	chr1:220129400-220133000	Weak transcription	Small Intestine	intestine
3	chr1:220132000-220133400	Enhancers	Rectal Mucosa Donor 29	rectum
4	chr1:220132000-220138800	Weak transcription	Aorta	Aorta
5	chr1:220132200-220144200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr1:220132400-220133000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:220132400-220133400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr1:220132400-220133600	Enhancers	Fetal Intestine Large	intestine
9	chr1:220132400-220143200	Weak transcription	Colonic Mucosa	Colon
10	chr1:220132600-220133600	Enhancers	Fetal Intestine Small	intestine
11	chr1:220132800-220133000	Enhancers	Duodenum Mucosa	Duodenum
12	chr1:220132800-220133000	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr1:220132800-220133000	Weak transcription	K562	blood
14	chr1:220132800-220141000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr1:220132800-220177000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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