The 2.0 version of rSNPBase

Variant report

Variant rs11118607
Chromosome Location chr1:220984364-220984365
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:71 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220965200-220985400 Weak transcription Aorta Aorta
2 chr1:220966400-220996000 Strong transcription Monocytes-CD14+_RO01746 blood
3 chr1:220966800-220985200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
4 chr1:220970400-220985800 Weak transcription Duodenum Mucosa Duodenum
5 chr1:220971200-220986400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
6 chr1:220971200-220991400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr1:220972800-220987600 Weak transcription Fetal Brain Male brain
8 chr1:220973200-220991800 Weak transcription Brain Anterior Caudate brain
9 chr1:220973400-221000200 Weak transcription Placenta Placenta
10 chr1:220974000-220992800 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr1:220974200-220986800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr1:220974200-220991200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
13 chr1:220975200-220992000 Weak transcription Brain Germinal Matrix brain
14 chr1:220975600-220988000 Weak transcription Brain Angular Gyrus brain
15 chr1:220975600-220991400 Weak transcription Brain Cingulate Gyrus brain
16 chr1:220976400-220988000 Weak transcription Spleen Spleen
17 chr1:220978400-220991200 Weak transcription iPS-15b Cell Line embryonic stem cell
18 chr1:220979400-220989400 Strong transcription Primary neutrophils fromperipheralblood blood
19 chr1:220979800-220985200 Weak transcription Cortex derived primary cultured neurospheres brain
20 chr1:220980000-220985200 Weak transcription H9 Cell Line embryonic stem cell
21 chr1:220980200-220984400 Weak transcription iPS-20b Cell Line embryonic stem cell
22 chr1:220980400-221001400 Weak transcription Gastric stomach
23 chr1:220980600-220986600 Weak transcription Fetal Brain Female brain
24 chr1:220981000-220987600 Strong transcription Hela-S3 cervix
25 chr1:220981400-220984800 Enhancers Fetal Heart heart
26 chr1:220981400-220991600 Strong transcription Fetal Intestine Small intestine
27 chr1:220982200-220984600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
28 chr1:220982200-220984600 Enhancers Liver Liver
29 chr1:220982400-220984600 Weak transcription Brain Hippocampus Middle brain
30 chr1:220982400-220987200 Weak transcription Brain Substantia Nigra brain
31 chr1:220982600-220985400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr1:220983200-220984600 Enhancers Left Ventricle heart
33 chr1:220983800-220984600 Enhancers Psoas Muscle Psoas
34 chr1:220983800-220984800 Genic enhancers Right Ventricle heart
35 chr1:220983800-220984800 Enhancers Skeletal Muscle Female skeletal muscle
36 chr1:220983800-220985400 Enhancers HUVEC blood vessel
37 chr1:220984000-220984400 Enhancers Fetal Muscle Leg muscle
38 chr1:220984000-220984400 Bivalent Enhancer Fetal Stomach stomach
39 chr1:220984000-220984600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
40 chr1:220984000-220984600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
41 chr1:220984000-220984800 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
42 chr1:220984000-220985000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
43 chr1:220984000-220985200 Weak transcription HUES48 Cell Line embryonic stem cell
44 chr1:220984000-220985200 Weak transcription HUES64 Cell Line embryonic stem cell
45 chr1:220984000-220985400 Weak transcription H1 Cell Line embryonic stem cell
46 chr1:220984000-220989400 Weak transcription Brain Inferior Temporal Lobe brain
47 chr1:220984000-220991600 Weak transcription Small Intestine intestine
48 chr1:220984000-220992200 Weak transcription Esophagus oesophagus
49 chr1:220984000-220997400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
50 chr1:220984000-220999800 Weak transcription Colonic Mucosa Colon

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Last update: Aug 31, 2015