Variant report

Variant	rs11118625
Chromosome Location	chr1:221103388-221103389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10495156	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11118626	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11584914	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11587049	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11590376	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1335914	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1335930	1.00[ASN][1000 genomes]
rs1414518	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1537806	0.85[ASN][1000 genomes]
rs1889795	0.95[EUR][1000 genomes]
rs2484698	0.85[ASN][1000 genomes]
rs2484699	0.85[ASN][1000 genomes]
rs4846670	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55703860	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56347111	0.85[EUR][1000 genomes]
rs61819203	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7546886	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221099800-221104200	Weak transcription	Psoas Muscle	Psoas
2	chr1:221100200-221104600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr1:221103200-221116800	Weak transcription	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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