Variant report

Variant	rs11118634
Chromosome Location	chr1:221205860-221205861
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:221200117..221203706-chr1:221205688..221208505,3	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10458466	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10458469	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10746405	0.84[EUR][1000 genomes]
rs10863575	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10863576	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10863577	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11118635	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4391670	0.84[EUR][1000 genomes]
rs4846682	0.84[EUR][1000 genomes]
rs4846683	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4846684	0.83[EUR][1000 genomes]
rs4846685	0.84[EUR][1000 genomes]
rs6687526	0.84[EUR][1000 genomes]
rs6687905	0.84[EUR][1000 genomes]
rs7517569	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7542237	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873199	chr1:221136672-221451217	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221196400-221206600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr1:221199800-221209200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr1:221203400-221206200	Weak transcription	Fetal Muscle Leg	muscle
4	chr1:221203400-221209000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:221203800-221206200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:221204200-221206000	Weak transcription	Fetal Lung	lung
7	chr1:221204200-221206200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr1:221204400-221207600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr1:221204600-221206400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:221204600-221210000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr1:221205000-221206000	Weak transcription	Fetal Stomach	stomach
12	chr1:221205000-221207400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:221205000-221207600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr1:221205000-221208400	Weak transcription	Left Ventricle	heart
15	chr1:221205000-221208400	Enhancers	Hela-S3	cervix
16	chr1:221205000-221209800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr1:221205200-221206200	Weak transcription	Colon Smooth Muscle	Colon
18	chr1:221205200-221206200	Weak transcription	K562	blood
19	chr1:221205400-221206800	Enhancers	Osteobl	bone
20	chr1:221205600-221206200	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr1:221205800-221207200	Enhancers	NHDF-Ad	bronchial
22	chr1:221205800-221207400	Enhancers	Rectal Smooth Muscle	rectum
23	chr1:221205800-221209000	Enhancers	HUVEC	blood vessel
24	chr1:221205800-221210000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links