Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DUSP10-2	chr1:221728934-221729770	XLOC_001212
2	lnc-DUSP10-2	chr1:221728928-221729770	NONHSAT009644

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10442685	0.80[ASN][1000 genomes]
rs10495172	0.82[ASN][1000 genomes]
rs11118768	0.89[ASN][1000 genomes]
rs11118778	0.80[ASN][1000 genomes]
rs12023780	0.80[ASN][1000 genomes]
rs12029530	0.80[ASN][1000 genomes]
rs12029601	0.80[ASN][1000 genomes]
rs1338074	0.85[ASN][1000 genomes]
rs1342092	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1538248	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1858565	0.85[ASN][1000 genomes]
rs1967553	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs3860323	0.80[ASN][1000 genomes]
rs4436399	0.80[ASN][1000 genomes]
rs4450027	0.80[ASN][1000 genomes]
rs4484930	0.80[ASN][1000 genomes]
rs4498809	0.85[ASN][1000 genomes]
rs6658414	0.80[ASN][1000 genomes]
rs6658746	0.85[ASN][1000 genomes]
rs6658755	0.80[ASN][1000 genomes]
rs6663415	0.80[ASN][1000 genomes]
rs6663644	0.80[ASN][1000 genomes]
rs6666514	0.80[ASN][1000 genomes]
rs6697462	0.80[ASN][1000 genomes]
rs6700617	0.85[ASN][1000 genomes]
rs9660488	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873200	chr1:221644180-221843191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1009838	chr1:221692621-221773945	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv535301	chr1:221692621-221773945	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221728600-221731200	Enhancers	Fetal Heart	heart
2	chr1:221728800-221731200	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr1:221729000-221729800	Enhancers	Pancreas	Pancrea
4	chr1:221729000-221729800	Enhancers	Psoas Muscle	Psoas
5	chr1:221729000-221729800	Enhancers	Right Ventricle	heart
6	chr1:221729000-221730600	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr1:221729200-221729800	Enhancers	Left Ventricle	heart
8	chr1:221729600-221730000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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